Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 172 4e-38
seq973 125 6e-24
>seq4326
Length=27076
Score = 172 bits (190), Expect = 4e-38
Identities = 532/813 (65%), Gaps = 10/813 (1%)
Strand=Plus/Minus
Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086
|||||| || || || || || | |||||||| | |||||||| || || | |||
Sbjct 16917 GAACCCTTACTGAAACCAAACCCACACCGTTTCGTCCTTTTCCCCATAGAATACCACGAT 16858
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
| |||| | || || ||||| | |||||| || ||||| ||||| ||||| ||||||
Sbjct 16857 GTCTGGCATTTTTATAAGAAGGCTGTAGCTTCTTTTTGGACTGTGGAAGAGGTGGATTTG 16798
Query 61147 TCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205
|||||||| | | | |||||| || | | | || |||| |||||||| |
Sbjct 16797 TCCAAAGATCTCATACATTGGGAGTCGCTCA-AGGTTGGGGAACGTCATTTCATATCCTA 16739
Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265
||||| || |||||||| || ||||| || || ||||| | | ||||| ||
Sbjct 16738 CGTGTTAGCTTTCTTTGCGGCGAGTGACGGAATTGTACTCGAGAACCTCCTAGAACGCTT 16679
Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325
| || || || || | | |||| ||||| || || || | ||||| || || ||
Sbjct 16678 CAGCCAAGAAGTCCAGATCCCAGAGGTTCGTTGCTTTTATGGGATGCAGATAGCTATCGA 16619
Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385
|||| | ||||| || |||||| | | | || ||||| ||||||| || ||
Sbjct 16618 GAATATTCACTCTGAAATGTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGA 16559
Query 61386 ACGTGAACGATTGTTCAATGCCAT-CGAGACGATACCGGCGGTGAAGCGGAAAGCGGATT 61444
| | || | ||||| ||||| | || || | | || | || || | |
Sbjct 16558 AAGGGACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCA-AAAAAGGCTCAGT 16500
Query 61445 GGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTG 61504
|||| || ||||||| | | | |||| |||| ||||| || | || ||||
Sbjct 16499 GGGCATTAGATTGGATTGGAGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTG 16440
Query 61505 CGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAAC 61564
| | || || ||||| || || ||| || || || || || ||| | |||||||
Sbjct 16439 CAGCAGTGGAAGGTGTTTTCTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAAC 16380
Query 61565 GTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGC 61624
| || |||||||| || ||| | || |||||||| || || | ||||| || | |
Sbjct 16379 GAGGTCTTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTAC 16320
Query 61625 ATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGC 61684
|||||||||| ||| | | |||| |||| || | | || || || |||| |
Sbjct 16319 ATTGTGATTTCGCTTGTCTATTATTTAAAC---ATATTATCAAAAAGCCTTCCAAGGAAC 16263
Query 61685 GTG-TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCT 61743
||| || || | || | | |||||||| || |||||||| ||| | | || |||
Sbjct 16262 GTGTTGAGTCA-ATAATAAGAGAGGCGGTTCTAATAGAACAGGAGTTTTTATCAGAAGCT 16204
Query 61744 TTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803
| || ||| | || || |||||||| ||| |||| ||||| ||||||||| |
Sbjct 16203 CTACCAGTCAGCTTAATTGGAATGAATTGCAAACTGATGTGTCAGTACATTGAATTTATC 16144
Query 61804 GCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835
|| ||| | || | || | | |||| ||||||
Sbjct 16143 GCAGACAGGCTACTAGTTGAACTTGGTTATGAA 16111
>seq973
Length=64032
Score = 125 bits (138), Expect = 6e-24
Identities = 200/287 (70%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313
||||| ||||||||||| ||||| || | |||||||| || ||| ||| || | |
Sbjct 12998 TCGAAATTTTCACCCCATAGTTCGGGCAAGCCTGGACACTCATGAGGATCCATAAGTGTC 13057
Query 66314 CAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAG 66373
|| | | | | ||| || || |||||||| | ||||||||||||||||| ||||
Sbjct 13058 CACTTATCGTTAGATTCAACGCGGCGCATAAACAAGTCAGGTATCCAGAGGGCAAAGAAC 13117
Query 66374 AGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAG 66433
| || ||||| || ||| || ||| |||||| |||| || | ||||| |||
Sbjct 13118 AAGTCCCGTGCACGAATCTCTTCGGCGCCAGTATTTTTCCGCATTTCTATGAACTGAAAT 13177
Query 66434 ATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCT 66493
| || | ||||| ||||| | ||| ||||| || | || ||| ||| || |||
Sbjct 13178 ACATCAGGGTGCCAAGGTTCTAAGTACATGGCAAAGGCTCCTGGACGCTTGTTACCTCCT 13237
Query 66494 TGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540
||||| || || || || | ||||| |||||||||||||| ||
Sbjct 13238 TGGTCAACATATCGTGCAGTGCTATTGAATACACGCAACATCGGGAC 13284
Score = 116 bits (128), Expect = 3e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 66010 AAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGT 66069
|| ||| || || || ||||||||| | ||||| || | | |||||| || ||||||||
Sbjct 12349 AATAGAGGCCAGATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCGGT 12408
Query 66070 GCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGC 66129
||| || || || ||||| || ||||| | || || ||||| || |||||||| |
Sbjct 12409 GCATAGGTTGCTACAGCGAATTGTGCCTAGATGTTGATGATTTGATTTACGATTGCAAGA 12468
Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188
||||||||||| ||| | ||| |||| || |||| ||| | ||||| || |||| ||
Sbjct 12469 ATCCTTGTACAACATAAATGGATTGCCTGTTTCAATCTGGCATTCAATAATAGCGTACC 12527
Score = 87.8 bits (96), Expect = 1e-12
Identities = 255/389 (66%), Gaps = 4/389 (1%)
Strand=Plus/Plus
Query 65152 CCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATATT 65211
|||||||||||||||||| || || |||| |||| ||||| | ||| | ||| | ||
Sbjct 10268 CCAAGCATAGAAATGCATACTTGTTATTTTTCCATAGTTCGGTTGGGCGAGATGTAAGTT 10327
Query 65212 CAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACG 65271
| ||||| ||||| || || | | ||||| |||||||||| || || ||
Sbjct 10328 AAGAGACTGGCTCTGGTCAATAAATGGGGCACGACCTGCAGCCATATCGATAATCTTCTT 10387
Query 65272 TCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGAATCTCCTCAAT 65331
| ||| |||||||| || |||||||||| | || ||| | ||||| | || ||
Sbjct 10388 TTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAACTCCTTAGGAATTCCATCGAT 10447
Query 65332 GTCCTGGACTGAACCACGACGTGCAATAAT-GC-GATTACGCATCGACTCTGACCACAAA 65389
| || | ||||| || || ||| || | || ||| || ||||||||
Sbjct 10448 ATGTTGAATAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCG--TCCGACCACAAC 10505
Query 65390 CCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTCGCCGGACAGT 65449
|| || | |||||| | || | | |||| | | |||||| || || |
Sbjct 10506 CCTAATTTAGTAAGATCATCAAGAAGATATGGATTCACAATTTGGAATTCACCACTTAAC 10565
Query 65450 ACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATT 65509
|| || || | | | |||| |||| ||||||| || ||| |||| || |||||
Sbjct 10566 ACGCGGCGAGAAAATACGTTGCTTGTGAAGGGTTCAGTAGACTCATTGTTCCCAAGAATC 10625
Query 65510 TGGGCAGTAGATGCAGTTGGCATGGGAGC 65538
|| | || ||||| ||||||||||| ||
Sbjct 10626 TGAGATGTTGATGCTGTTGGCATGGGGGC 10654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397454836617200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |