Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4326 172 4e-38 seq973 125 6e-24 >seq4326 Length=27076 Score = 172 bits (190), Expect = 4e-38 Identities = 532/813 (65%), Gaps = 10/813 (1%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 |||||| || || || || || | |||||||| | |||||||| || || | ||| Sbjct 16917 GAACCCTTACTGAAACCAAACCCACACCGTTTCGTCCTTTTCCCCATAGAATACCACGAT 16858 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 | |||| | || || ||||| | |||||| || ||||| ||||| ||||| |||||| Sbjct 16857 GTCTGGCATTTTTATAAGAAGGCTGTAGCTTCTTTTTGGACTGTGGAAGAGGTGGATTTG 16798 Query 61147 TCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 |||||||| | | | |||||| || | | | || |||| |||||||| | Sbjct 16797 TCCAAAGATCTCATACATTGGGAGTCGCTCA-AGGTTGGGGAACGTCATTTCATATCCTA 16739 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 ||||| || |||||||| || ||||| || || ||||| | | ||||| || Sbjct 16738 CGTGTTAGCTTTCTTTGCGGCGAGTGACGGAATTGTACTCGAGAACCTCCTAGAACGCTT 16679 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | || || || || | | |||| ||||| || || || | ||||| || || || Sbjct 16678 CAGCCAAGAAGTCCAGATCCCAGAGGTTCGTTGCTTTTATGGGATGCAGATAGCTATCGA 16619 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385 |||| | ||||| || |||||| | | | || ||||| ||||||| || || Sbjct 16618 GAATATTCACTCTGAAATGTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGA 16559 Query 61386 ACGTGAACGATTGTTCAATGCCAT-CGAGACGATACCGGCGGTGAAGCGGAAAGCGGATT 61444 | | || | ||||| ||||| | || || | | || | || || | | Sbjct 16558 AAGGGACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCA-AAAAAGGCTCAGT 16500 Query 61445 GGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTG 61504 |||| || ||||||| | | | |||| |||| ||||| || | || |||| Sbjct 16499 GGGCATTAGATTGGATTGGAGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTG 16440 Query 61505 CGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAAC 61564 | | || || ||||| || || ||| || || || || || ||| | ||||||| Sbjct 16439 CAGCAGTGGAAGGTGTTTTCTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAAC 16380 Query 61565 GTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGC 61624 | || |||||||| || ||| | || |||||||| || || | ||||| || | | Sbjct 16379 GAGGTCTTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTAC 16320 Query 61625 ATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGC 61684 |||||||||| ||| | | |||| |||| || | | || || || |||| | Sbjct 16319 ATTGTGATTTCGCTTGTCTATTATTTAAAC---ATATTATCAAAAAGCCTTCCAAGGAAC 16263 Query 61685 GTG-TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCT 61743 ||| || || | || | | |||||||| || |||||||| ||| | | || ||| Sbjct 16262 GTGTTGAGTCA-ATAATAAGAGAGGCGGTTCTAATAGAACAGGAGTTTTTATCAGAAGCT 16204 Query 61744 TTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803 | || ||| | || || |||||||| ||| |||| ||||| ||||||||| | Sbjct 16203 CTACCAGTCAGCTTAATTGGAATGAATTGCAAACTGATGTGTCAGTACATTGAATTTATC 16144 Query 61804 GCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835 || ||| | || | || | | |||| |||||| Sbjct 16143 GCAGACAGGCTACTAGTTGAACTTGGTTATGAA 16111 >seq973 Length=64032 Score = 125 bits (138), Expect = 6e-24 Identities = 200/287 (70%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313 ||||| ||||||||||| ||||| || | |||||||| || ||| ||| || | | Sbjct 12998 TCGAAATTTTCACCCCATAGTTCGGGCAAGCCTGGACACTCATGAGGATCCATAAGTGTC 13057 Query 66314 CAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAG 66373 || | | | | ||| || || |||||||| | ||||||||||||||||| |||| Sbjct 13058 CACTTATCGTTAGATTCAACGCGGCGCATAAACAAGTCAGGTATCCAGAGGGCAAAGAAC 13117 Query 66374 AGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAG 66433 | || ||||| || ||| || ||| |||||| |||| || | ||||| ||| Sbjct 13118 AAGTCCCGTGCACGAATCTCTTCGGCGCCAGTATTTTTCCGCATTTCTATGAACTGAAAT 13177 Query 66434 ATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCT 66493 | || | ||||| ||||| | ||| ||||| || | || ||| ||| || ||| Sbjct 13178 ACATCAGGGTGCCAAGGTTCTAAGTACATGGCAAAGGCTCCTGGACGCTTGTTACCTCCT 13237 Query 66494 TGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||||| || || || || | ||||| |||||||||||||| || Sbjct 13238 TGGTCAACATATCGTGCAGTGCTATTGAATACACGCAACATCGGGAC 13284 Score = 116 bits (128), Expect = 3e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 66010 AAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGT 66069 || ||| || || || ||||||||| | ||||| || | | |||||| || |||||||| Sbjct 12349 AATAGAGGCCAGATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCGGT 12408 Query 66070 GCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGC 66129 ||| || || || ||||| || ||||| | || || ||||| || |||||||| | Sbjct 12409 GCATAGGTTGCTACAGCGAATTGTGCCTAGATGTTGATGATTTGATTTACGATTGCAAGA 12468 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 ||||||||||| ||| | ||| |||| || |||| ||| | ||||| || |||| || Sbjct 12469 ATCCTTGTACAACATAAATGGATTGCCTGTTTCAATCTGGCATTCAATAATAGCGTACC 12527 Score = 87.8 bits (96), Expect = 1e-12 Identities = 255/389 (66%), Gaps = 4/389 (1%) Strand=Plus/Plus Query 65152 CCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATATT 65211 |||||||||||||||||| || || |||| |||| ||||| | ||| | ||| | || Sbjct 10268 CCAAGCATAGAAATGCATACTTGTTATTTTTCCATAGTTCGGTTGGGCGAGATGTAAGTT 10327 Query 65212 CAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACG 65271 | ||||| ||||| || || | | ||||| |||||||||| || || || Sbjct 10328 AAGAGACTGGCTCTGGTCAATAAATGGGGCACGACCTGCAGCCATATCGATAATCTTCTT 10387 Query 65272 TCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGAATCTCCTCAAT 65331 | ||| |||||||| || |||||||||| | || ||| | ||||| | || || Sbjct 10388 TTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAACTCCTTAGGAATTCCATCGAT 10447 Query 65332 GTCCTGGACTGAACCACGACGTGCAATAAT-GC-GATTACGCATCGACTCTGACCACAAA 65389 | || | ||||| || || ||| || | || ||| || |||||||| Sbjct 10448 ATGTTGAATAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCG--TCCGACCACAAC 10505 Query 65390 CCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTCGCCGGACAGT 65449 || || | |||||| | || | | |||| | | |||||| || || | Sbjct 10506 CCTAATTTAGTAAGATCATCAAGAAGATATGGATTCACAATTTGGAATTCACCACTTAAC 10565 Query 65450 ACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATT 65509 || || || | | | |||| |||| ||||||| || ||| |||| || ||||| Sbjct 10566 ACGCGGCGAGAAAATACGTTGCTTGTGAAGGGTTCAGTAGACTCATTGTTCCCAAGAATC 10625 Query 65510 TGGGCAGTAGATGCAGTTGGCATGGGAGC 65538 || | || ||||| ||||||||||| || Sbjct 10626 TGAGATGTTGATGCTGTTGGCATGGGGGC 10654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454836617200