Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq12720 140 5e-31 seq812 134 2e-29 seq838 113 7e-23 seq14802 91.5 2e-16 seq2600 86.0 9e-15 seq708 84.2 3e-14 seq7004 82.4 1e-13 seq52541 80.6 4e-13 >seq12720 Length=8327 Score = 140 bits (154), Expect = 5e-31 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||||| | | ||| ||||| |||||| || ||||||||||||| | Sbjct 7832 GTACAAAGGGCAACGACGTAATTAGCGCAAGCTT-ATGACTTGCACTTACTAGGAATT-C 7889 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || ||||||||| | ||||| |||||| | | || || || Sbjct 7890 CTCATTCACGGGGAATAATTGCAATCCCCGATCCCAGTCACGACGTTGATGAAACAGTTT 7949 Query 120 ACCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| ||| |||| | | ||||||| || | ||| |||||||| | || Sbjct 7950 GCCCAACCCTTTCGAGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACTTGT 8009 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 ||||||| |||||||||||||||||||||||||||||||| Sbjct 8010 GGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCC 8049 >seq812 Length=34437 Score = 134 bits (148), Expect = 2e-29 Identities = 168/224 (75%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||| | ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 20501 GTACAAAGGGCAGGGACGGAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 20444 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 20443 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 20384 Query 120 ACCCGGACCTGTCGG-CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 | | ||| |||| ||||| | ||||| | || | ||| |||||||| ||| Sbjct 20383 GCTCAACCCTTTCGGGCCAAGTTTCCAGACTTGCTGGCACCGTCATTGTAGCGCATGTGT 20324 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 20323 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 20281 >seq838 Length=34139 Score = 113 bits (124), Expect = 7e-23 Identities = 163/222 (73%), Gaps = 10/222 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| ||||||| ||| ||| ||||| |||||| || || || ||||||| | Sbjct 6783 GTACAAAGGGCAAGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTGACCAGGAATT-C 6840 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATC--CCCA-TCACGATGAAATTTCAA-AG 116 |||||| ||| || ||||| ||| | || |||| |||||||| | || || Sbjct 6841 CTCGTTCAAGGGGAATAATTG---TGAGCCATGAGCCCAGTCACGATGGTGATGAAACAG 6897 Query 117 ATT-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 || ||| | || ||||| | | ||||||| || ||||| |||||||| | Sbjct 6898 TTTGACCAACATCTTCGGGCCAGGTTTCCAGACTCGCTGGCACCATCATTGTAGCGCATG 6957 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 || ||||| || | |||||||||||||||||||||||||| Sbjct 6958 TGTGGCCCCAGACGTTTAAGGGCATCACAGACCTGTTATTGC 6999 >seq14802 Length=7187 Score = 91.5 bits (100), Expect = 2e-16 Identities = 158/223 (71%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| | | ||||| |||| | || |||| ||| | ||| Sbjct 3697 GTACAAAGGGCAGGGACATAATCAGCTCAAGCTT-ATGAGTTGCATTTACCAGG-ACTTC 3640 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| || | | | |||||||| | || | | | |||||| | || || Sbjct 3639 CTCATTCACGGGGATTAATTGCAAACCCCAGTCACGAACTTGATGAA-----ACAGTTTT 3585 Query 121 CCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| | |||| ||||| | |||||||||| | ||| |||||||| |||| | Sbjct 3584 CCCAACCCTTTTGGCC-AGGTGTTCAGACTCGTTGGCACCGTCATTGTAGCGCACGTGTG 3526 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||| |||||||| || ||||||||| ||||||| ||||| Sbjct 3525 TCCCCAGACATCTAAAGGAATCACAGACGCGTTATTG-CTCAA 3484 >seq2600 Length=22559 Score = 86.0 bits (94), Expect = 9e-15 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64 |||||| ||||||| | ||| | | || |||||| || ||||| |||| || ||||| Sbjct 12736 AAAGGGTAGGGACGCAATCAGATCAAAGTTTATGACTTGCACTTACCAGGAGTT-CCTCG 12794 Query 65 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATTACCC 123 || | | || |||| ||| | ||||| |||||| || || | | || || Sbjct 12795 TTCACGGGGAATAATTACAAGCCCCGATCCCAGTCACGACTGTGATGAAACAATTTGCCA 12854 Query 124 GGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182 ||| |||| | |||| |||||||||| ||| |||||| |||| |||| Sbjct 12855 AACCCTTTCGGGCCAGGTTTCCAGACTCGTTGGGACTGTCATTGTAGCTTACGTGTGGCC 12914 Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 | | |||||||| |||||||||||| |||||||| ||||| Sbjct 12915 CCGGACATCTAACGGCATCACAGACATGTTATTG-CTCAA 12953 >seq708 Length=35992 Score = 84.2 bits (92), Expect = 3e-14 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 ||||||| || | ||| |||||||| |||| ||||| | |||||||||||||||||| Sbjct 19700 AGACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACA 19759 Query 205 GACCTGTTATTGCCTCAA 222 |||||||||||| ||||| Sbjct 19760 GACCTGTTATTG-CTCAA 19776 >seq7004 Length=13263 Score = 82.4 bits (90), Expect = 1e-13 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192 ||||| | | |||||||| || | ||| ||| |||| |||| ||||| | |||||| Sbjct 13182 GGCCAGGTTCTTAGACTCGCTGGCACCGTCATTGTGGCGCACGTGTGGCCCCGGACATCT 13123 Query 193 AAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||||||||||||||||||||| ||||| Sbjct 13122 AAGGGCATCACAGACCTGTTATTG-CTCAA 13094 >seq52541 Length=708 Score = 80.6 bits (88), Expect = 4e-13 Identities = 122/167 (73%), Gaps = 5/167 (3%) Strand=Plus/Plus Query 49 ACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCT-ATCCCCATCACGATGAA 107 || ||||||| ||||||| | || || |||||||| | || |||| |||||| | Sbjct 1 ACCAGGAATT-CCTCGTTCACGAGGAATAATTGCAA-GCCCTGATCCTAGTCACGACGGT 58 Query 108 ATTTCAA-AGATTACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGT 165 | | || || | ||| ||| |||| | |||| | | ||||| || | ||| | Sbjct 59 AATGAAACAGTCTGCCCAACCCTTTCGGGCCAGGTTTTCACACTCGCTGGCACCGTCATT 118 Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 |||||||||||| | ||| | |||||||||||||||||||||||||| Sbjct 119 GTAGCGCGCGTGTGACCCCGGACATCTAAGGGCATCACAGACCTGTT 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751547885615