Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq10859 176 8e-42 seq1280 123 5e-26 seq7179 100 5e-19 >seq10859 Length=9562 Score = 176 bits (194), Expect = 8e-42 Identities = 216/286 (76%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAG 92 |||| ||||| || | |||||| | || | | || | |||||||||||| ||||| | Sbjct 505 TCCGGATGCCTTTAAACGGGTGT-CGGGAGCGGATGGCATTTTTACTTTGAACAAATTTG 447 Query 93 AGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA--GCATGGAATAATAGAATAGGACGT 150 |||| ||||||||||||| ||| | | |||| |||||||||||| |||||||| | Sbjct 446 AGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTATTGCATGGAATAATGAAATAGGACTT 387 Query 151 GCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGG 209 ||||||||||||| ||||| | ||| ||| ||||||||||| ||||| || | |||| Sbjct 386 -CGGTTCTATTTTGACGGTTT-TCGGATCCGAAGTAATGATTAAGAGGGACAGACAGGGG 329 Query 210 TGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 | ||| ||| |||||||||||||| |||| |||| |||||| |||| Sbjct 328 CATTTGTACGGCGGTGTTAGAGGTGAAATTCTGGGATCGCCGCCAGACAAACTACAGCGA 269 Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||| || ||||| ||||||||||| ||||| || ||||||| || Sbjct 268 AAGCATTTGCCAAGAATGTTTTCATTGATCAG-GAGCGAAAGTCAG 224 >seq1280 Length=29794 Score = 123 bits (136), Expect = 5e-26 Identities = 179/248 (72%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT--AGCATG 131 ||||||||||| ||||| ||||| |||||||| |||||| | | | ||| | |||| Sbjct 14468 TTTACTTTGAACAAATTCGAGTGCCAAAAGCAGGACTTTGCGCCAGAAAATTCTAACATG 14409 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||| ||||||| | | ||||||||||||| |||| ||| ||| |||||| || Sbjct 14408 GAATAATGACATAGGACTT-CAGTTCTATTTTGTTTGTTTTCAGGTCCGAGGTAATGGTT 14350 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAAT----TGTCAGAGGTGAAATTCTTGGATT 247 || | ||| || | ||| || | | || ||| |||| ||||||||| |||| Sbjct 14349 AAAATGGACAGACAAGGG---CATTTTGTAAGGTGATGTTAGAGATGAAATTCTAGGATC 14293 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||| |||||| |||||| | || |||| ||||||||||| | ||| || | Sbjct 14292 GCTGTCAGATAAACTACAGCGAAACCATTTGCCAAAAATGTTTTCATTGAACAG-GAGCT 14234 Query 308 AAAGTTAG 315 ||||| || Sbjct 14233 AAAGTCAG 14226 >seq7179 Length=13042 Score = 100 bits (110), Expect = 5e-19 Identities = 171/244 (70%), Gaps = 18/244 (7%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TCGAATACATT-AGCATG 131 ||||||||||| ||||| ||||| | |||| ||| || ||| | || || || ||||| Sbjct 9465 TTTACTTTGAACAAATTGGAGTGCTTAAAGTAGGTCTGTGCGCCTAAAACTTTCTGCATG 9524 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||| |||||||| | ||||||| ||||||||||| | ||| | Sbjct 9525 GAATAATGAAATAGGAC-TTTGGTTCTACTTTGTTGGTTT-TTGGA-------------T 9569 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 | ||| || |||||| | ||| ||| |||| |||| |||| |||| | Sbjct 9570 TCGAAGGACAGACGGGGGCATTTGTACGGTGGTGTTAGAGATGAAGTTCTGGGATCGACG 9629 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 |||| |||||| ||||||| || |||||| ||||||| ||| ||||| || |||| | Sbjct 9630 CCAGACAAACTACATCGAAAGCATTTACCAAGAATGTTTTAATTGATCAG-GAGCGAACG 9688 Query 312 TTAG 315 | || Sbjct 9689 TCAG 9692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914632017728