Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1174 127 9e-27 seq9378 109 2e-21 seq2151 109 2e-21 seq59280 95.1 5e-17 seq4998 89.7 2e-15 seq27044 87.8 7e-15 >seq1174 Length=30640 Score = 127 bits (140), Expect = 9e-27 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| ||||||||||||||| |||||||| || ||| ||||| Sbjct 16801 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTAAACTATGCTTGTGAAGGTTGAAG 16860 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||||||| ||||| |||||| || |||| ||||| ||||||||||||||| || Sbjct 16861 CCAGAGGAAGCTCTGATGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGCATAACG 16920 Query 669 TGGGTATAGGGGCGA 683 || ||||||||| || Sbjct 16921 TGAGTATAGGGGTGA 16935 >seq9378 Length=10753 Score = 109 bits (120), Expect = 2e-21 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||| |||||| ||||||||||||||||| || ||| ||||| Sbjct 1743 GAGCAAGAGCGTACACTTTGAGACCCGGAAGATGGTGAACTATGCTTGCGAAGGTTGAAG 1802 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||||||| |||| |||||| || ||| | ||| ||| |||||| ||||| || Sbjct 1803 TCAGAGGAAATTCTGATGGAGGACCGTGGCGATCCTGACGTACAAATCAATCGTATAACG 1862 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 1863 TGAGTATAGGGGCGA 1877 >seq2151 Length=24494 Score = 109 bits (120), Expect = 2e-21 Identities = 105/135 (78%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||| |||||||||||||||||| |||| ||| ||||| Sbjct 9077 GAGCAAGAGCGTACACGTTTAGACCCGAAAGATGGTGAAATATGA------AGGTTGAAG 9024 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||||||||||||||| ||| || |||| ||||| |||||||||||||||| || Sbjct 9023 CCAGAGGAAACTCTGGTTGAGAACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 8964 Query 669 TGGGTATAGGGGCGA 683 || | |||| ||||| Sbjct 8963 TGAGCATAGTGGCGA 8949 >seq59280 Length=562 Score = 95.1 bits (104), Expect = 5e-17 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 589 TATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCG 648 ||||| || ||| |||||||||||||||||||||| |||| || |||| ||||| || Sbjct 1 TATGCTTGTGAAGGTTGAAGCCAGAGGAAACTCTGGTTGAGGACCGTAGCGATTCTGACG 60 Query 649 TGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| |||||| || || |||||||||||| Sbjct 61 TGCAAATTGATCGTATAACGTGAGTATAGGGGCGA 95 >seq4998 Length=16190 Score = 89.7 bits (98), Expect = 2e-15 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 |||||||||| || ||| ||||||||||||||||| | |||| || || ||||| Sbjct 12470 GAGTAAGAGCGTATACATTGAGACCCGAAAGATGGTGAGCCATGCTTGCGAAGATTGAAG 12411 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 ||||||| |||||| ||||| | || || | |||| ||||||||| ||||| Sbjct 12410 CCAGAGGTAACTCTAGTGGAAGGCCGTAGTGATTCTCACGTGCAAATAAATCGT 12357 >seq27044 Length=3081 Score = 87.8 bits (96), Expect = 7e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| ||||| || |||| |||||||| |||| |||||||||| || ||| ||||| Sbjct 764 GAGCAAGAGTGTACACGTTGAGACCCGAACGATGATGAACTATGCTTGTGAAGGTTGAAG 705 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAA 654 ||||||||||||| ||| |||| || || | ||||| ||||| || Sbjct 704 CCAGAGGAAACTCCGGTTGAGGACCGTAGTGATTCTGACGTGCGAA 659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078668791550