Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq12720 185 1e-44 seq7004 172 9e-41 seq838 158 2e-36 seq13277 127 3e-27 seq1233 127 3e-27 seq708 127 3e-27 seq3778 118 2e-24 seq2225 116 6e-24 seq19691 104 4e-20 seq39598 98.7 2e-18 seq14802 98.7 2e-18 seq9729 93.3 7e-17 seq812 89.7 8e-16 seq52541 87.8 3e-15 seq6158 82.4 1e-13 >seq12720 Length=8327 Score = 185 bits (204), Expect = 1e-44 Identities = 111/117 (95%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 8188 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 8247 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 8248 ACTAAGAACTGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCCGTC 8304 Score = 98.7 bits (108), Expect = 2e-18 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| | || ||||||| |||||||||||||||||||| Sbjct 7978 ACTCGCTGGCACCGTCATTGTAGCGCACTTGTGGCCCAGGACATCTAAGGGCATCACAGA 8037 Query 62 CCTGTTATTGCC 73 |||||||||||| Sbjct 8038 CCTGTTATTGCC 8049 >seq7004 Length=13263 Score = 172 bits (190), Expect = 9e-41 Identities = 106/113 (94%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| Sbjct 12958 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACATATCGCTCCACCA 12899 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||||||||||||||| |||||| |||||||||||||||| |||||| Sbjct 12898 ACTAAGAACGGCCATGCACCATCACCCACCGAATCAAGAAAGAGCTGTCAATC 12846 Score = 93.3 bits (102), Expect = 7e-17 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| ||| |||| |||| ||||| | |||||||||||||||||||| Sbjct 13168 ACTCGCTGGCACCGTCATTGTGGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 13109 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 13108 CCTGTTATTG-CTCAA 13094 >seq838 Length=34139 Score = 158 bits (174), Expect = 2e-36 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| | ||||| |||||||||||| | ||||||||| |||||| | Sbjct 7093 CTATTTAGCAGGTTAAACTATCGTTTGTTATCGGAATTGAGCAGACAAATTGCTCCACAA 7152 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 7153 ACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAATGAGCTATCAATCTGTC 7209 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| || ||| |||||||| ||| ||||| || | ||||||||||||||| Sbjct 6929 ACTCGCTGGCACCATCATTGTAGCGCATGTGTGGCCCCAGACGTTTAAGGGCATCACAGA 6988 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 6989 CCTGTTATTGC 6999 >seq13277 Length=8007 Score = 127 bits (140), Expect = 3e-27 Identities = 73/75 (97%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 1262 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 1203 Query 202 ACTAAGAACGGCCAT 216 ||||||||||||||| Sbjct 1202 ACTAAGAACGGCCAT 1188 >seq1233 Length=30083 Score = 127 bits (140), Expect = 3e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||| ||||||| | |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1840 GTTCCTTATCGGGACTAACCAGACAAATCGCTCCACCAACTAAGAACGGCTATGCACCAC 1899 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| ||| ||||||| |||||||| |||||| Sbjct 1900 CACCCACGGAACCAAGAAAAAGCTATCAGTCTGTC 1934 >seq708 Length=35992 Score = 127 bits (140), Expect = 3e-27 Identities = 73/75 (97%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 19912 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 19971 Query 202 ACTAAGAACGGCCAT 216 ||||||||||||||| Sbjct 19972 ACTAAGAACGGCCAT 19986 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| |||| ||||| | |||||||||||||||||||| Sbjct 19702 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 19761 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 19762 CCTGTTATTG-CTCAA 19776 >seq3778 Length=18774 Score = 118 bits (130), Expect = 2e-24 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 TAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAA 60 Query 207 GAACGGCCATGCACCACC 224 |||||||||| || ||| Sbjct 61 GAACGGCCATTGACGACC 78 >seq2225 Length=24129 Score = 116 bits (128), Expect = 6e-24 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 ||||||| ||||||||| |||| || |||||||||||||||||||||||||| |||||| Sbjct 12020 TATCGGAGTTAACCAGAAAAATTGCTTCACCAACTAAGAACGGCCATGCACCATCACCCA 11961 Query 230 TAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| |||| ||||||||| Sbjct 11960 CCGAATCAAGAAAGGGCTACCAATCTGTC 11932 >seq19691 Length=5130 Score = 104 bits (114), Expect = 4e-20 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||||| | ||||||||||||||| ||||||||||||||||| |||||||| Sbjct 4822 CTATTTAGGAGGTTTAAATCTCGTTCGTTATCGAAATTAACCAGACAAATCGCTCCACCA 4763 Query 202 ACTAAGAACGGC 213 |||||||||||| Sbjct 4762 ACTAAGAACGGC 4751 >seq39598 Length=1377 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||||| | || ||||||||||||||| |||||||||||||||||||| || | Sbjct 1274 CTATTTAGCAGATCAACGTCTCGTTCGTTATCAGAATTAACCAGACAAATCACCTCA-AA 1332 Query 202 ACTAAGAACGGCCATG 217 |||||||||||||||| Sbjct 1333 ACTAAGAACGGCCATG 1348 >seq14802 Length=7187 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGT-CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 ||||||| |||||||| || || ||| |||||||||||||||||||||| || ||||||| Sbjct 3349 CTATTTATCAGGTTAAAGTTCTTGTTTGTTATCGGAATTAACCAGACAAGTCGCTCCACC 3290 Query 201 AACTAAGAACGGCCAT 216 |||||| ||||||||| Sbjct 3289 AACTAAAAACGGCCAT 3274 >seq9729 Length=10447 Score = 93.3 bits (102), Expect = 7e-17 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 |||||||||| | ||||||| || ||||||| |||||||| || |||||||||| | Sbjct 8826 ATCGGAATTACCTGGACAAATTGCTGCACCAACAAAGAACGGTTATACACCACCACCGAC 8885 Query 231 AGAATCAAGAAAGAGCTATCAATCTG 256 |||||||||||||||||||||||| Sbjct 8886 CAAATCAAGAAAGAGCTATCAATCTG 8911 >seq812 Length=34437 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||| | |||| |||||| |||||||| ||| ||||| | |||||||||||||||||||| Sbjct 20355 ACTTGCTGGCACCGTCATTGTAGCGCATGTGTGGCCCCGGACATCTAAGGGCATCACAGA 20296 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 20295 CCTGTTATTG-CTCAA 20281 >seq52541 Length=708 Score = 87.8 bits (96), Expect = 3e-15 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| ||||||||||||| | ||| | |||||||||||||||||||| Sbjct 100 ACTCGCTGGCACCGTCATTGTAGCGCGCGTGTGACCCCGGACATCTAAGGGCATCACAGA 159 Query 62 CCTGTT 67 |||||| Sbjct 160 CCTGTT 165 >seq6158 Length=14399 Score = 82.4 bits (90), Expect = 1e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||| ||| ||| | |||| ||||||| || || |||||||| Sbjct 13053 CTATTTAGCAGGTTAAAGTCTTGTTTGTTGTTAGAATCAACCAGATAAGTCGCTCCACCA 12994 Query 202 ACTAAGAACGGCCATGCA 219 ||||| || |||||| || Sbjct 12993 ACTAAAAATGGCCATCCA 12976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796320951141