Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq13733 183 5e-44 seq75 163 5e-38 seq28 138 2e-30 seq8691 122 1e-25 seq23902 86.0 1e-14 seq26757 82.4 1e-13 seq115 77.0 6e-12 >seq13733 Length=7758 Score = 183 bits (202), Expect = 5e-44 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||| |||||||||||||||||||| | ||||||||| | ||||| ||||| | Sbjct 7157 TCATTAGTATGGTAAAACTAACCTGTCTCACGGTGGTCTAAACTTAACTCACTTTCCCCA 7098 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||| ||||| || |||| || |||| | Sbjct 7097 TTAGTGGGTGAACAATCCAACGCTTGATGAATTCCGCTTCACAATTATAGAAAAAGCCAA 7038 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191 |||| |||||| ||||||| ||||||||||||||||||||| Sbjct 7037 CATCAAAGGATTAAAAAGCGACGTCGCTATGAACGCTTGGC 6997 >seq75 Length=59585 Score = 163 bits (180), Expect = 5e-38 Identities = 116/133 (87%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||| |||||||||||||||||||| | ||||||||||||| |||||||||||| Sbjct 27834 TCATTAGTAAGGTAAAACTAACCTGTCTCACAATGGTCTAAACCCAGTTCACGTTCCCTA 27893 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| ||| |||||||||||| || ||| ||| |||| | Sbjct 27894 TTAGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATAATAAGAATAGCCAA 27953 Query 151 CATCGAAGGATCA 163 ||||||||||||| Sbjct 27954 CATCGAAGGATCA 27966 >seq28 Length=73278 Score = 138 bits (152), Expect = 2e-30 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| | || | |||||||||||| |||||| ||||||||| |||||||||||||||| | Sbjct 40123 TCATTATTAAGATAAAACTAACCTATCTCATCACGGTCTAAGCCCAGCTCACGTTCCCAA 40064 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||| ||||| ||| |||||||||||| ||| ||||||||| | Sbjct 40063 TTAGTGGGTGAACAAACCAACACTTGGTGAATTCTGCTTCATAGTGAATGGAAGAGCCTA 40004 Query 151 CATCGAAGG 159 |||||||| Sbjct 40003 TATCGAAGG 39995 >seq8691 Length=11360 Score = 122 bits (134), Expect = 1e-25 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| Sbjct 7077 TCATTAGTAGGGTAAAACTAACTTGTCTCACGACGGTCTAAACCCAGCTCATGTTCCCTA 7136 Query 91 TTAGTGGGTGAACAATCCAACGCTT 115 |||||| ||||||||| ||||||| Sbjct 7137 TTAGTGAATGAACAATCGAACGCTT 7161 >seq23902 Length=3839 Score = 86.0 bits (94), Expect = 1e-14 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 |||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 AAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGT 52 >seq26757 Length=3143 Score = 82.4 bits (90), Expect = 1e-13 Identities = 86/112 (77%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 ||||||||||| ||| | || ||| ||||| | | |||| ||||| || || ||| Sbjct 2764 TCCAACGCTTATTGAACTATGTTTCACAATGATGGTTATAGCCAACATCAAAAAATTAAA 2705 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 || | |||||| | ||||||||| ||||||||||||||| ||||||||| Sbjct 2704 AATGA-CGTCGCCAAAAACGCTTGGTAGCCACAAGCCAGTTACCCCTGTGGT 2654 >seq115 Length=54007 Score = 77.0 bits (84), Expect = 6e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 |||||||||||| |||||| |||||| || | ||||||||||| |||| ||| ||| | Sbjct 3785 AGGAAGAGCCGATATCGAAAGATCAATTGGCGATGTCGCTATGAATGCTTAGCTACCATA 3726 Query 199 AGCCAGTTAT 208 |||||||||| Sbjct 3725 AGCCAGTTAT 3716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853869750816