Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq812 91.5 9e-17 seq838 82.4 5e-14 seq12720 78.8 6e-13 >seq812 Length=34437 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 20541 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 20484 Query 109 TAATACAACGCAAGCT 124 ||| || |||||||| Sbjct 20483 GAAT-CAGCGCAAGCT 20469 >seq838 Length=34139 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||| || ||||||||| |||||||||||||| ||||| Sbjct 6743 CTCACTAAACCATT-CAATCGGTAGAAA-CGACGGGCGTTGTGTACAAAGGGCAAGGACG 6800 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 6801 TAAT-CAGCGCAAGCT 6815 >seq12720 Length=8327 Score = 78.8 bits (86), Expect = 6e-13 Identities = 78/96 (81%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 29 CAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGG 88 |||||||| | | || | |||||||| ||||| || ||| ||||| ||||||||||| Sbjct 7774 CAAAGCCACTAC--AACGACCTCACTAAACCATT-CAATCGATAGTA-GCGACGGGCGGT 7829 Query 89 GTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||||| | |||||||| Sbjct 7830 GTGTACAAAGGGCAACGACGTAAT-TAGCGCAAGCT 7864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300624987980