Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq12720 172 1e-40 seq812 161 2e-37 seq838 129 1e-27 seq7004 127 4e-27 seq14802 114 2e-23 seq2600 114 2e-23 seq52541 113 9e-23 seq708 113 9e-23 seq6158 84.2 4e-14 >seq12720 Length=8327 Score = 172 bits (190), Expect = 1e-40 Identities = 197/262 (75%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | |||| || || || ||| || | |||||||||||||| Sbjct 8092 CTTCTTAGAGGGACAAGCGGCACACCTAAGTCGTACGAAATTGG--GCAATAACAGGTCT 8035 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186 ||||||||||||||||| ||||||| || | |||||||| |||| | |||| ||||| | Sbjct 8034 GTGATGCCCTTAGATGTCCTGGGCCACAAGTGCGCTACAATGACGGTGCCAGCGAGTCTG 7975 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 |||| | || |||| |||| || || || | | |||||| ||||| | | Sbjct 7974 GAAACCTGGCTCGAAAGGGTTGGGCAAACTGTTTCATCAACGTCGTGACTGGGATCGGGG 7915 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||||| | | | || ||||||| ||||||||| || ||||| ||| ||| | Sbjct 7914 ATTGCAATTATTCCCCGTGAATGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCT 7855 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||| ||||||||||| Sbjct 7854 AATTACGTCGTTGCCCTTTGTA 7833 >seq812 Length=34437 Score = 161 bits (178), Expect = 2e-37 Identities = 170/221 (77%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||||||||||||||||||||||||| | ||||| ||| |||||||| | Sbjct 20281 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCCACACATGCGCTACAAT 20339 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCT 227 ||| | |||| | ||| | ||||||| ||| || || | || || || | | | Sbjct 20340 GACGGTGCCAGCAAGTCTGGAAACTTGGCCCGAAAGGGTTGAGCAAACTGTTTCATCACC 20399 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 |||||| ||||| | | ||||||||||| | | | |||||||||| ||| ||||| | Sbjct 20400 GTCGTGACTGGGATCGGGGCTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTG 20459 Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||| ||||| ||||||||||||||||| Sbjct 20460 CAAGTCATAAGCTTGCGCTGATTCCGTCCCTGCCCTTTGTA 20500 >seq838 Length=34139 Score = 129 bits (142), Expect = 1e-27 Identities = 161/217 (74%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||||||||||||||||||||||||| | || ||||| ||| |||||||| ||| | Sbjct 6999 GCAATAACAGGTCTGTGATGCCCTTAAACGTCTGGGGCCACACATGCGCTACAATGATGG 6940 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGT-AATCTTGTTAAACTCTGTCGT 232 |||| ||||| | | ||||| |||| | | ||| || || || | | | |||| Sbjct 6939 TGCCAGCGAGTCTGGAAACCTGGCCCGAAGATGTTGGTCAAACTGTTTCATCACCATCGT 6880 Query 233 G-CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 | ||||| | || | |||||||| | ||| |||||||||| ||| || || || | Sbjct 6879 GACTGGGCTCATGGC-TCACAATTATTCCCCTTGAACGAGGAATTCCTGGTCAGTGCAAG 6821 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| ||| ||||||||||| ||||||||||| Sbjct 6820 TCATAAGCTTGCGCTGATTACGTCCTTGCCCTTTGTA 6784 >seq7004 Length=13263 Score = 127 bits (140), Expect = 4e-27 Identities = 158/212 (75%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC----TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | |||| ||||| | ||| || ||| ||||||||||||| Sbjct 13054 CTTCTTAGAGGGACAAGCGGCACACTCAAGTTGCACGAAATT-GAG-CAATAACAGGTCT 13111 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186 ||||||||||||||||| | ||||| |||| |||| ||| |||| | |||| ||||| | Sbjct 13112 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCGCCACAATGACGGTGCCAGCGAGTCTA 13171 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 | |||| | ||| |||| | | || || || | | | |||||| ||||| | | Sbjct 13172 AGAACCTGGCCCGAAAGGGTTAGACAAACTGTTTCATCACCGTCGTGACTGGGATCGGGG 13231 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCC 278 ||||||||||| | | | |||||||||| || Sbjct 13232 CTTGCAATTATTCCCCGTGAACGAGGAATTCC 13263 >seq14802 Length=7187 Score = 114 bits (126), Expect = 2e-23 Identities = 187/263 (71%), Gaps = 16/263 (6%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC----TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | || | | ||| | ||| || ||| ||||||| |||| Sbjct 3444 CTTCTTAGAGGGACAAGCGTCATATTTAAGTGGCACGAAATT-GAG-CAATAACGCGTCT 3501 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186 ||||| || |||||||| ||| | |||| |||||||| |||| | |||||||||| | Sbjct 3502 GTGATTCCTTTAGATGTCTGGGGACACACGTGCGCTACAATGACGGTGCCAACGAGTCTG 3561 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG-CTGGGGATAGAG 245 | ||||| |||| |||| |||| || || || | | ||||| |||||| | Sbjct 3562 AACACCT-GGCCAAAAGGGTTGGGAAAACTGTTTCATCAAGTTCGTGACTGGGGTT---- 3616 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||| | | | | || |||||| ||| |||| || |||| ||| | | Sbjct 3617 ---TGCAATTAATCCCCGTGAATGAGGAAGTCCTGGTAAATGCAACTCATAAGCTTGAGC 3673 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 |||||| |||||||||||||||| Sbjct 3674 TGATTATGTCCCTGCCCTTTGTA 3696 >seq2600 Length=22559 Score = 114 bits (126), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||| |||||||||||| |||||||| | ||||| |||| |||||| | Sbjct 12953 TTGAG-CAATAACATGTCTGTGATGCCGTTAGATGTCCGGGGCCACACGTAAGCTACAAT 12895 Query 169 GACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT 227 ||||| ||||||||| | |||| | ||| |||| | || || | || | | | Sbjct 12894 GACAGTCCCAACGAGTCTGGAAACCTGGCCCGAAAGGGTTTGGCAAATTGTTTCATCACA 12835 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 |||||| ||||| | | ||| ||||||| | | | ||||||||| ||| ||||| | Sbjct 12834 GTCGTGACTGGGATCGGGGCTTGTAATTATTCCCCGTGAACGAGGAACTCCTGGTAAGTG 12775 Query 288 CGTGTCATCAGC-ACGCGTTGATTACGTCCCTGCCCTTT 325 | ||||| | | | ||||| ||||||| |||||| Sbjct 12774 CAAGTCATAAACTTTGATCTGATTGCGTCCCTACCCTTT 12736 >seq52541 Length=708 Score = 113 bits (124), Expect = 9e-23 Identities = 127/166 (77%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 119 AACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCA 178 |||||||||||||||||||||||||| | ||| | ||||||||||||| |||| | |||| Sbjct 165 AACAGGTCTGTGATGCCCTTAGATGTCCGGGGTCACACGCGCGCTACAATGACGGTGCCA 106 Query 179 ACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG-CTG 236 ||||| | | |||| | ||| |||| |||| | || || | | |||||| || Sbjct 105 GCGAGTGTGAAAACCTGGCCCGAAAGGGTTGGGCAGACTGTTTCATTACCGTCGTGACTA 46 Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 || || || ||||||||||| ||| | |||||||||| ||| || Sbjct 45 GGATCAGGGC-TTGCAATTATTCCTCGTGAACGAGGAATTCCTGGT 1 >seq708 Length=35992 Score = 113 bits (124), Expect = 9e-23 Identities = 132/173 (76%), Gaps = 8/173 (5%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | |||| || || || ||| || ||| ||||||||||||| Sbjct 19816 CTTCTTAGAGGGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 19759 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186 ||||||||||||||||| | ||||| |||| |||||||| |||| | |||| ||||| | Sbjct 19758 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCGCTACAATGACGGTGCCAGCGAGTCTG 19699 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG-CTGGG 238 |||| | ||| |||| |||| || || || | | | |||||| ||||| Sbjct 19698 GGAACCTGGCCCGAAAGGGTTGGGCAAACTGTTTCATCACCGTCGTGACTGGG 19646 >seq6158 Length=14399 Score = 84.2 bits (92), Expect = 4e-14 Identities = 158/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTG-GGCCGCACGCGCGCTACAC 167 ||||| || ||||| || |||||||||||||||||| | | |||| |||| |||||||| Sbjct 13188 TTGAGCCA-TAACAAGTATGTGATGCCCTTAGATGTCCAGTGGCCACACGTGCGCTACAA 13246 Query 168 TGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226 |||| ||| ||||| | |||| | | | || | | || || || || | | | Sbjct 13247 CAACAGTACCAGCGAGTCTGGAAACCTAGCCTGAAAAGGTTTGGCAAACTGTTTCATCAC 13306 Query 227 TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286 || || ||||| ||| |||| |||||| | | | || ||| ||| || ||| Sbjct 13307 CATCATGACTGGGATCGAGGCTTGCGATTATTCCCCATGAATGAGAAATTCCAGTTAATT 13366 Query 287 GCGTGTCATCAGC-ACG----CGTTGATTACGTCCCTGCCCTTTGTA 328 || ||||| ||| | | || ||||||| |||||| |||||||| Sbjct 13367 GCAAGTCATAAGCTAAGCTTTCGCTGATTACATCCCTGTCCTTTGTA 13413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946612158208