Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4752 284 4e-74 seq13235 215 2e-53 seq1017 187 8e-45 seq58824 170 6e-40 seq39928 165 3e-38 seq2144 161 3e-37 seq54616 131 5e-28 seq9378 127 7e-27 seq5797 111 5e-22 seq9986 86.0 2e-14 seq923 75.2 4e-11 >seq4752 Length=16626 Score = 284 bits (314), Expect = 4e-74 Identities = 221/264 (84%), Gaps = 11/264 (4%) Strand=Plus/Plus Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA--ACG- 235 |||| ||| |||||||| |||| || | | |||||||||||| || ||| | | ||| Sbjct 12096 TTCACTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTTACGCTGGACAACGA 12155 Query 236 --------GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287 | ||||| ||| ||||| | ||| ||| |||||||||||||||||||| Sbjct 12156 AGCACCCAGTTCCCATCTATACTACATCCATCATGTCTCCTCACAAAGTCGGACTAGAGT 12215 Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 ||| ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| Sbjct 12216 CAAACTCAACAGGGTCTTCTTTCCCCGCTAATTTTATCAAGCCCGTTCCCTTGGTTGTGG 12275 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 12276 TTTCGCTAGACAGTAGATAGGGACAGCGGGAATCTCGTTAATCCATTCATGCGCGTCACT 12335 Query 408 AATTAGATGACGAGGCATTTGGCT 431 |||||||||||||||||||||||| Sbjct 12336 AATTAGATGACGAGGCATTTGGCT 12359 >seq13235 Length=8027 Score = 215 bits (238), Expect = 2e-53 Identities = 170/203 (84%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 || ||| ||| ||||| | ||| || | | || |||||||| |||||||| | || Sbjct 3744 TCACACCTATACTACATCCATCATGTA--TCCTCAGAGTCGGACCAGAGTCAAACCTAAA 3687 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||| |||||| |||| |||| ||||||||||||||||||| ||||||||| ||||| Sbjct 3686 AGGGTCTCCTTTCCTCGCTAATTCTGCCAAGCCCGTTCCCTTGGTTGTGGTTTCACTAGA 3627 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||||| |||| ||||| ||||||||||||||||| || || ||||| ||||||||| Sbjct 3626 TAGTAGATCGGGATAGTGGTAATCTCGTTAATCCATTTATATGCATCACTTATTAGATGA 3567 Query 418 CGAGGCATTTGGCTACCTTAAGA 440 |||||||||||||||||||| || Sbjct 3566 CGAGGCATTTGGCTACCTTATGA 3544 >seq1017 Length=32144 Score = 187 bits (206), Expect = 8e-45 Identities = 208/275 (76%), Gaps = 16/275 (6%) Strand=Plus/Minus Query 170 CAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC 229 |||| ||| |||||||| ||| |||| | |||| |||||||||| || |||||| Sbjct 21949 CAGTCCCGTTTCATTGAATAAATAAACCAT-GATA---GTAGTGGTATCTCGTTTGCGCT 21894 Query 230 G-------AAACGGC----TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||| || || ||| ||||| | ||| ||| | ||||||| | Sbjct 21893 AGGCACTAAAACATTGATTTCTGACCTATACTACATCCATCATGTCTCCTAACAAAGTTG 21834 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 | |||||||||||| ||||||||||||||| || ||| |||| ||||||||||||| || Sbjct 21833 AATTAGAGTCAAGCTAAACAGGGTCTTCTTTTCCTGCTAATTCTGCCAAGCCCGTTCTCT 21774 Query 339 TGGCTGTGG-TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 ||||||| ||| | |||||||||| ||| |||| ||||||||| |||||| |||| || Sbjct 21773 AAGCTGTGGTTTTTGTTAGATAGTAGGTAGAGACAATGGGAATCTTGTTAATACATTTAT 21714 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||| || ||| ||||| ||||||||| ||| Sbjct 21713 GCGCGTCAATAGTTAAATGACAAGGCATTTGACTA 21679 >seq58824 Length=574 Score = 170 bits (188), Expect = 6e-40 Identities = 99/102 (97%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 566 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTCGGTTGAATTTCTTCC 507 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||||||||||||||||||||||||| ||||| Sbjct 506 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGAGTCAA 465 >seq39928 Length=1352 Score = 165 bits (182), Expect = 3e-38 Identities = 97/101 (96%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 431 TACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCAC 490 |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| Sbjct 744 TACCTTAAGAGAGTCATAGTTACTGCCGCCGTTTACTCGCGCTTGGTTGTATTTCTTCAT 803 Query 491 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||||||||||||||| Sbjct 804 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 844 >seq2144 Length=24516 Score = 161 bits (178), Expect = 3e-37 Identities = 138/170 (81%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 || |||| || | ||||| | ||| ||| |||||||||| |||||||||||||||| Sbjct 3483 GCCCCCATTTGTACTACATCCATCATGTCTCCTCACAAAGTCACACTAGAGTCAAGCTCA 3424 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||| ||||||||| | || ||||||||||| ||||||||||||||||||||| Sbjct 3423 ACAGGGTTTTCTTTCCCTATTAATCCCGCCAAGCCCATTCCCTTGGCTGTGGTTTCGC-- 3366 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 || ||| | |||||||| ||||||| |||||||||| |||| ||||| Sbjct 3365 --TATTAGTTTGGGACAGTAGGAATCTGATTAATCCATTTATGCACGTCA 3318 >seq54616 Length=661 Score = 131 bits (144), Expect = 5e-28 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC 488 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 585 GCTACGATAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC 644 Query 489 ACTTTGACATTCAGAGC 505 ||||||||||||||||| Sbjct 645 ACTTTGACATTCAGAGC 661 >seq9378 Length=10753 Score = 127 bits (140), Expect = 7e-27 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506 |||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||| Sbjct 3396 TAGTTACTCCCGCCGTTTACTCGTGCTTGGTTGAATTTCTTTACTTTGACGTTCAGAGCA 3337 Query 507 CTGGGCAGAAATCACATTGCGTCAA 531 ||||||| ||||||||||||| ||| Sbjct 3336 CTGGGCATAAATCACATTGCGCCAA 3312 >seq5797 Length=14938 Score = 111 bits (122), Expect = 5e-22 Identities = 121/161 (75%), Gaps = 11/161 (7%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC------ 228 ||| | || ||| |||||||| ||| || | | | |||||||||| |||||| Sbjct 4908 CCGTTCCACTGAATAAGTAAAGAAAAAATGATAGCAATGGTATTTCATTTGCGCTGGGCT 4967 Query 229 -CGAAACG----GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 |||| | |||||||| ||| | ||| | ||| ||| |||||||||||||||| Sbjct 4968 CCGAATCACCCAGCTCCCACCTATACCACATCCATCATGTCTCCTCACAAAGTCGGACTA 5027 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 |||||||| |||||||||||||||||||||| | |||| || Sbjct 5028 GAGTCAAGATCAACAGGGTCTTCTTTCCCCGTTAATTCTGC 5068 >seq9986 Length=10226 Score = 86.0 bits (94), Expect = 2e-14 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 ||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 3389 ATTAGATGACGAGGCATTTAGCTACCTTAAGAGAGTCATAGTTACCCCCGCC 3440 >seq923 Length=33117 Score = 75.2 bits (82), Expect = 4e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC 455 ||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 15177 TTAGATGACGAGGTATTTAGCTACCTTAAGAGAGTCATAGTTACTC 15132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634185178528