Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq14173 233 6e-59 seq331 214 5e-53 seq777 212 2e-52 seq4956 156 1e-35 seq10859 132 1e-28 seq15334 120 9e-25 seq1668 114 4e-23 seq5274 105 2e-20 seq21323 102 2e-19 seq22463 91.5 4e-16 seq3952 77.0 1e-11 >seq14173 Length=7526 Score = 233 bits (258), Expect = 6e-59 Identities = 297/402 (74%), Gaps = 25/402 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATT-GTCACTAC 58 |||||||||| |||||||| || ||| ||| || ||||| |||||| || |||||||| Sbjct 4813 GTACTCATTCGAATTACAAAGCCTCAATGGAGTCCCGTATCCGTATTTTTTTGTCACTAC 4754 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||||| || ||||| |||||||||| ||| ||||| ||| |||||||||||||||||| Sbjct 4753 CTCCCTATGCCGGGAGTGGGTAATTTCCGCACCTGCCGCCGTCCTTGGATGTGGTAGCCA 4694 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 | | ||||||| |||||||||||| ||| || ||||||||||||| ||| | ||||| Sbjct 4693 TATTTCAGGCTTCCTCTCCGGAATAAAACACTGATTCCCCGTTACCTGTTATCATCATGG 4634 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||||| | | |||| || || ||||| || ||| ||||||| || | |||| | Sbjct 4633 TAGGCAAATCACCTATCA--ATAAACTGATAAGGTAGATATTTGAAAGATACTTCGCTGA 4576 Query 239 CTCAAGGCC--ATGCGATTCGTTAAGTTATTATGAATCACCA-----------AGGAGCC 285 | ||||||| ||| || || ||||||| | ||| || || | Sbjct 4575 CGCAAGGCCGACTGCTATCAGTAAAGTTATCCAAAGTCATCACAGAATGTAACAGCACAG 4516 Query 286 CCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCC-----CTTCCGAAGTCGGGGTTT 340 |||||| |||| || | | |||||||||| ||||| ||| || ||| ||| || Sbjct 4515 CCGAAGCCGGTTGATTCTGT-TCTAATAAATGCACCCGTCTTCTTGCG-GGTCAGGGATT 4458 Query 341 TTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT 381 | | |||||||||||||||| ||||||| | |||||||||| Sbjct 4457 TAAGGCATGTATTAGCTCTATAATTACCGCAATTATCCATGT 4416 >seq331 Length=43519 Score = 214 bits (236), Expect = 5e-53 Identities = 306/426 (72%), Gaps = 35/426 (8%) Strand=Plus/Plus Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 34641 TTAGATGTGCTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCAGATTCCCCGTTA 34700 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 | | |||| ||| | | | |||| || | || ||||||||||||| ||||| Sbjct 34701 TC-------ATCATGATAGCCAAATTACCTATCAACAAA--TTGATAGGGCAGATATTTG 34751 Query 223 AATGAACCATCGCCGGCTCAAGGCC--ATGCGATTCGTTAAGTTATTATGAATCACCA-- 278 || || || |||||| | ||| || ||||||| || || |||| | ||| || Sbjct 34752 AAAGATCCTTCGCCGACACAAAACCGAATGCGATCAGTAAACTTATCCGGGGTCATCACA 34811 Query 279 -------AGGAGCCC---CGAAGGG-----CGTTGGTTTTTTATCTAATAAATACACCCC 323 || | | | ||||| | | | || | |||||||||| | ||| Sbjct 34812 GAATGTTAGAAACACAGCCGAAGCCTCACCCTATCGGTTCTGTTCTAATAAATGCGCCCG 34871 Query 324 TTCCGAAG----TCGGGGTTTTTAG-CATGTATTAGCTCTAGAATTACCACGGTTATCCA 378 |||| | || ||| || || ||||||||||||||||||||| || ||||| || Sbjct 34872 TTCCCTTGCGGGTCAGGGATTCAAGGCATGTATTAGCTCTAGAATTATTACAGTTATTCA 34931 Query 379 TGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACT 438 ||||| | ||| || || ||| ||| |||||||| ||||||||| | ||||||| Sbjct 34932 TGTAGCATT-TACGATATAAAGAACCATAGCTGATTTAGTGAGCCATTGGTGGTTTCACC 34990 Query 439 GTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 498 | | | | | ||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 34991 ATTTTAAG-GTATGTACTTAGACATTCATGGCTTAATCTCTGAGACAAGCATATGACTAC 35049 Query 499 TGGCAG 504 | |||| Sbjct 35050 TAGCAG 35055 >seq777 Length=34792 Score = 212 bits (234), Expect = 2e-52 Identities = 305/418 (73%), Gaps = 28/418 (7%) Strand=Plus/Plus Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||| ||||| ||| ||| || ||||||||||| | |||||| ||||||||||| Sbjct 15390 TTGGATGTGTTAGCCATTTATCAAACTTCCTCTCCGGAACCAAACCCTGATTCCCCGTTA 15449 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| |||||||||| | | |||| || | || ||||||||||||| || || Sbjct 15450 CCCGTTATCGTCATGGTAGGCAAATCACCTATCAACAAA--TTGATAGGGCAGACATATG 15507 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTAT-GAATC-ACCAAG 280 || || || ||||| | || | | | || | ||| || | |||| | || | Sbjct 15508 AAAGATCCGTCGCCAACCCA--GTAAAGTTATCCAG--AGTCATCACAGAATGTAACAGG 15563 Query 281 GAGCCCCGAAGGG-----CGTTGGTTTTTTATCTAATAAATACACCC-----CTTCCGAA 330 | |||||| || | | || | |||||||||| ||||| ||| || Sbjct 15564 CACAGTCGAAGGCTCATCCGATTGGTTCTGCTCTAATAAATGCACCCGCCCCCTTGCGG- 15622 Query 331 GTCGGGGTTTTTAG-CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT 389 ||| ||| || || |||||||||| ||||||||||| || ||||||||||||| | | Sbjct 15623 GTCAGGGATTGAAGGCATGTATTAGTTCTAGAATTACTACAGTTATCCATGTAGCATT-T 15681 Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT--AGAT- 446 || ||| || ||| ||| ||||||||||||||||||||| |||||| || | || | Sbjct 15682 ACGATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCAACGTTTTAAGGTA 15741 Query 447 TGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||| ||||||||||| || | |||||||||||||||||||||||| Sbjct 15742 TGC----ACTTAGATATGCATGGCTTGATACCTAAGACAAGCATATGACTACTGGCAG 15795 >seq4956 Length=16271 Score = 156 bits (172), Expect = 1e-35 Identities = 120/141 (85%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||| |||||| || | ||| ||| || |||| |||||| | ||||||||||| Sbjct 10943 ACTCATTCGAATTACGGAGCCTCAACTGAGTCCCGTATTTGTATTTTTCGTCACTACCTC 11002 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||||| ||||| || ||||||| ||||||||||||| |||||||||||||||||| ||| Sbjct 11003 CCCGTGCCGGGAGTGAGTAATTTTCGCGCCTGCTGCCGTCCTTGGATGTGGTAGCCATTT 11062 Query 122 CTCAGGCTCCCTCTCCGGAAT 142 ||||||||||||||| || || Sbjct 11063 CTCAGGCTCCCTCTCAGGTAT 11083 >seq10859 Length=9562 Score = 132 bits (146), Expect = 1e-28 Identities = 108/130 (83%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||| |||||| || | ||| ||| || ||||| |||||| | |||||||| Sbjct 782 GTACTCATTCGAATTACGGAGCCTCAATTGAGTCCCGTATCCGTATTTTTCGTCACTACA 841 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| |||| |||||||||| ||| ||||||||| |||||||||||| |||| | Sbjct 842 TCCCCGTGCCGGGGGTGGGTAATTTTCGCCCCTGCTGCCGTCCTTGGATGTGATAGCTAT 901 Query 120 TTCTCAGGCT 129 |||||||||| Sbjct 902 TTCTCAGGCT 911 >seq15334 Length=6927 Score = 120 bits (132), Expect = 9e-25 Identities = 162/225 (72%), Gaps = 18/225 (8%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||| |||||| || |||| || | || ||| || ||||| || ||| ||||||||| | Sbjct 5139 GTAATCATTCGAACTACAGAGCCTTAATTGAGTCCCGTATCTGTGTTTTTTGTCACTAAC 5080 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| | | | ||||||||| |||| ||||||| |||||||||||||||||| | Sbjct 5079 TCCCCGTGCCAGTAGCGGGTAATTTTCGCGACTGCTGCAGTCCTTGGATGTGGTAGCCAT 5020 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 || | ||| |||| ||| |||||||||||||||| | ||| Sbjct 5019 TT---------------CAGAAGCGAAACCTTATTCCCCGTTACCCGTAATCTTTACGGT 4975 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 |||| | | ||||| |||| |||||| |||||| ||||||| Sbjct 4974 AGGCAAATCAAATACCA-AGAAA-TTGATACGGCAGATATTTGAA 4932 >seq1668 Length=27059 Score = 114 bits (126), Expect = 4e-23 Identities = 120/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 || ||| |||||| ||| || ||||||||||||| | ||| ||| || ||| || | Sbjct 11027 ATAAGCACTAGAAGTACTACAGTTATCCATGTAGCACT-TACGATCTAAGTAACTATCTC 10969 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 ||| ||| |||| | ||||| |||| || || | | | | |||||||||||| |||| Sbjct 10968 TGACTTAGTGAGTCCTTCGCGGTTTTACCGTCTTAAG-GTATGTACTTAGACATGTATGG 10910 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||||||||| |||||||||||| ||| Sbjct 10909 CTTAATCTATGAGACAAGTATATGACTACTGACAG 10875 >seq5274 Length=15763 Score = 105 bits (116), Expect = 2e-20 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 69 CGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGC 128 ||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||||||| Sbjct 2 CGGGAGTGGGTAATTTTCGCGCCTGCTGCCGTCCTTGGATGTGGTAGCCATTTCTCAGGC 61 Query 129 TCCCTCTC 136 |||||||| Sbjct 62 TCCCTCTC 69 >seq21323 Length=4573 Score = 102 bits (112), Expect = 2e-19 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 52 TCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG 111 ||||||||||| |||| || | |||||| | |||||||||| |||| || ||| |||| Sbjct 706 TCACTACCTCCTCGTGCCGT-AGTGGGTACTCTGCGCGCCTGGTGCCGTCTTTGAATGTA 648 Query 112 GTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTG 169 | ||| |||| ||||| ||||||||||| | ||||||| || |||||| || ||||| Sbjct 647 GCAGCGATTTCCCAGGC-CCCTCTCCGGAGTTGAACCCTGATCCCCCGTCACTCGTTG 591 >seq22463 Length=4245 Score = 91.5 bits (100), Expect = 4e-16 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 |||||||| || ||||||||| || |||||||||||||| | ||| | | || ||| | Sbjct 3746 ATGTATTACCTGTAGAATTACTACAGTTATCCATGTAGT-ATTTACGAACTAAGGAACCA 3804 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGT 440 || ||||||||||||||||||||| | ||||| || Sbjct 3805 TAGCTGATTTAATGAGCCATTCGCGGCTTCACCGT 3839 >seq3952 Length=18332 Score = 77.0 bits (84), Expect = 1e-11 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 3166 TATTTAGACATGCATGACTTAATCTCTGAGACAAGCATATGACTACTGGAAG 3217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509462630656