Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1181 187 2e-42 seq2578 125 6e-24 >seq1181 Length=30581 Score = 187 bits (206), Expect = 2e-42 Identities = 535/813 (66%), Gaps = 10/813 (1%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 |||||| || || || || || | |||||||| | |||||||| || ||| | ||| Sbjct 9348 GAACCCTTACTGAAACCAAACCCACACCGTTTCGTCCTTTTCCCCATAGAATATCACGAT 9407 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 | |||| | || || ||||| | |||||| || ||||| ||||| ||||| |||||| Sbjct 9408 GTCTGGCATTTTTATAAGAAGGCTGTAGCTTCTTTTTGGACTGTGGAAGAGGTGGATTTG 9467 Query 61147 TCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 |||||||| | | | |||||| || | | | || |||| |||||||| | Sbjct 9468 TCCAAAGATCTCATACATTGGGAGTCGCTCA-AGGTTGGGGAACGTCATTTCATATCCTA 9526 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 ||||| || |||||||| || ||||| || || ||||| | | |||||||| Sbjct 9527 CGTGTTAGCTTTCTTTGCGGCGAGTGACGGAATTGTACTCGAGAACCTCCTAGAACGTTT 9586 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | ||||| || || | | |||| ||||| || || || | ||||| || || || Sbjct 9587 CAGCCAGGAAGTCCAGATCCCAGAGGTTCGTTGCTTTTATGGGATGCAGATAGCTATCGA 9646 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385 |||| | ||||| || |||||| | | | || ||||| ||||||| || || Sbjct 9647 GAATATTCACTCTGAAATGTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGA 9706 Query 61386 ACGTGAACGATTGTTCAATGCCAT-CGAGACGATACCGGCGGTGAAGCGGAAAGCGGATT 61444 | | || | ||||| ||||| | || || | | || | || || | | Sbjct 9707 AAGGGACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCA-AAAAAGGCTCAGT 9765 Query 61445 GGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTG 61504 |||| || ||||||| | | | |||| |||| ||||| || | || |||| Sbjct 9766 GGGCATTAGATTGGATTGGAGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTG 9825 Query 61505 CGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAAC 61564 | | || || ||||| ||||| ||| || || || || || ||| | ||||||| Sbjct 9826 CAGCAGTGGAAGGTGTCTTTTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAAC 9885 Query 61565 GTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGC 61624 | || |||||||| || ||| | || |||||||| || || | ||||| || | | Sbjct 9886 GAGGTCTTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTAC 9945 Query 61625 ATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGC 61684 |||||||||| || | | |||| |||| || | | || || || |||| | Sbjct 9946 ATTGTGATTTCGCCTGTCTATTATTTAAAC---ATATTATCAAAAAGCCTTCCAAGGAAC 10002 Query 61685 GTG-TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCT 61743 ||| || || | || | | |||||||| || |||||||| ||| | | || ||| Sbjct 10003 GTGTTGAGTCA-ATAATAAGAGAGGCGGTTCTAATAGAACAGGAGTTTTTATCAGAAGCT 10061 Query 61744 TTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803 | || ||| | || || |||||||| ||| |||| ||||| ||||||||| | Sbjct 10062 CTACCAGTCAGCTTAATTGGAATGAATTGCAAACTGATGTGTCAGTACATTGAATTTATC 10121 Query 61804 GCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835 || ||| | || | || | | |||| |||||| Sbjct 10122 GCAGACAGGCTACTAGTTGAACTTGGTTATGAA 10154 >seq2578 Length=22660 Score = 125 bits (138), Expect = 6e-24 Identities = 200/287 (70%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313 ||||| ||||||||||| ||||| || | |||||||| || ||| ||| || | | Sbjct 11731 TCGAAATTTTCACCCCATAGTTCGGGCAAGCCTGGACACTCATGAGGATCCATAAGTGTC 11672 Query 66314 CAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAG 66373 || | | | | ||| || || |||||||| | ||||||||||||||||| |||| Sbjct 11671 CACTTATCGTTAGATTCAACGCGGCGCATAAACAAGTCAGGTATCCAGAGGGCAAAGAAC 11612 Query 66374 AGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAG 66433 | || ||||| || ||| || ||| |||||| |||| || | ||||| ||| Sbjct 11611 AAGTCCCGTGCACGAATCTCTTCGGCGCCAGTATTTTTTCGCATTTCTATGAACTGAAAT 11552 Query 66434 ATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCT 66493 | || | ||||| ||||| | ||| ||||| || | || ||| ||| || ||| Sbjct 11551 ACATCAGGGTGCCAAGGTTCTAAGTACATGGCAAAAGCTCCTGGACGCTTGTTACCTCCT 11492 Query 66494 TGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||||| || || || || | ||||| |||||||||||||| || Sbjct 11491 TGGTCAACATATCGTGCAGTGCTATTGAATACACGCAACATCGGGAC 11445 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 66010 AAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGT 66069 || ||| || | || ||||||||| | ||||| || | | |||||| || |||||||| Sbjct 12395 AATAGAGGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCGGT 12336 Query 66070 GCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGC 66129 ||| || || || || || || ||||| | || || ||||| || |||||||| | Sbjct 12335 GCATAGGTTGCTACAACGAATTGTGCCTAGATGTTGGTGATTTGATTTACGATTGCAAGA 12276 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 ||||||||||| ||| | ||| |||| || |||| ||| | ||||| || |||| || Sbjct 12275 ATCCTTGTACAACATAAATGGATTGCCTGTTTCAATCTGGCATTCAATAATAGCGTACC 12217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397267292113040