Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq314 134 2e-29 seq2149 107 3e-21 seq20502 75.2 2e-11 >seq314 Length=59671 Score = 134 bits (148), Expect = 2e-29 Identities = 168/224 (75%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||| ||| ||| ||||| |||||| || || || ||||||| | Sbjct 37809 GTACAAAGGGCAGGGACGTGATCAGCGCAAGCTT-ATGACTTGCACTCACCAGGAATT-C 37866 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| || ||| | |||||||| | || || || Sbjct 37867 CTCGTTCACGGGGAATAATTGCAAGCCTCGATCTCAGTCACGATGGTGCTGAAACAGTTT 37926 Query 120 ACCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| || |||| | | ||||||| || | ||| |||||||| |||| Sbjct 37927 GCCCAACCCTTTCATGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 37986 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | ||||||||||||||||||||| |||||||| ||||| Sbjct 37987 GGCCCCGGACATCTAAGGGCATCACAGACTTGTTATTG-CTCAA 38029 >seq2149 Length=30883 Score = 107 bits (118), Expect = 3e-21 Identities = 163/223 (73%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 ||||| || |||||||| ||| || ||||| |||||| | ||||| ||||||| ||| Sbjct 26886 ACAAAAAGCGGGGACGTAATCAGTGCAAGCTT-ATGACTTCCACTTACCAGGAATT-CCT 26943 Query 63 CGTTGAAGACCAACAATTGCAATGATCT-ATCCCCATCACGATGAAATTTCAA-AGATTA 120 |||| | | || |||||||| | || ||| | |||||| || | || || || Sbjct 26944 CGTTTATGGGGAATAATTGCAA-GCCCTGATCTCAGTCACGACGATGATGAAACAGTTTG 27002 Query 121 CCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||| | || | | ||| ||| || | ||| |||||| | |||| Sbjct 27003 CCCAATCCTTTCGAGTCAGGTTTCCAGATTCGCTGGCACCGTCATTGTAGCACACGTGTA 27062 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||| |||||||||||||||||||||||||||||| ||||| Sbjct 27063 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 27104 >seq20502 Length=3817 Score = 75.2 bits (82), Expect = 2e-11 Identities = 80/103 (78%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| ||| ||| ||| ||||| |||||| || ||||| ||||| ||| Sbjct 2688 GTACAAAGGGCAGGGATGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAA-TTC 2745 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 ||||| | | || |||||||| | ||||| |||||| Sbjct 2746 TTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGA 2788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751693527335