Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3525 123 5e-26 seq1273 107 4e-21 seq2149 98.7 2e-18 seq8571 89.7 9e-16 >seq3525 Length=23898 Score = 123 bits (136), Expect = 5e-26 Identities = 176/240 (73%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TC-GAATACATTAGCATG 131 |||||||||| |||| ||||| |||||||||| || || || ||| | || | || Sbjct 20766 TTTACTTTGAGCGAATTTGAGTGCTCAAAGCAGGTCTGTGTGTCTGAAAATTTTTACGTG 20707 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGAT 190 |||| || |||||||| | |||||||||||||||||||| | ||| || |||||| | Sbjct 20706 GAATGATGAAATAGGACTT-CGGTTCTATTTTGTTGGTTT-TCGGATGCGAAGTAATGGT 20649 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| || |||| | | |||| ||| | ||||||||| | |||| Sbjct 20648 TAAGAGGGACAGACGGGAGCATTTGTATGGCGATGTTACTGGTGAAATTGTGGGATCGCC 20589 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| ||| || |||||||| || |||| ||||||||||| ||||| || ||||| Sbjct 20588 GCCAGACAAACAACAGCGAAAGCATTTGCCAAAAATGTTTTCATTGATCAG-GAGCGAAA 20530 >seq1273 Length=38621 Score = 107 bits (118), Expect = 4e-21 Identities = 177/248 (71%), Gaps = 13/248 (5%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATG 131 ||||||| ||| ||||| |||| ||||||||||||| | | | ||| | | ||||| Sbjct 15735 TTTACTTCGAACAAATTTTAGTGCTCAAAGCAGGCCTGTACGCCTGAAAATTCTTGCATG 15794 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGAT 190 ||||||| ||||||| | |||||| ||||| ||||||| | ||| ||| ||||| | Sbjct 15795 GAATAATGAAATAGGATTT-CGGTTCCATTTTATTGGTTT-TCGGATCCGAACTAATGGT 15852 Query 191 TAATAGGGATAGTCGG---GGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 || ||| || ||| ||| | |||| ||| |||||||||||||| |||| Sbjct 15853 TA----GGAGAGACGGACAGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGATC 15908 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||| | |||| | ||||| || |||| ||||||||| | ||||| ||||| Sbjct 15909 GCCGCCAGACAAGCTACAGAGAAAGTATTTGTCAAGAATGTTTTCACTGATCAG-GAACG 15967 Query 308 AAAGTTAG 315 || || || Sbjct 15968 AAGGTCAG 15975 >seq2149 Length=30883 Score = 98.7 bits (108), Expect = 2e-18 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTA 185 |||||||||||| |||||||| | |||||||||||||||||||| | ||| ||| ||| Sbjct 27819 GCATGGAATAATGAAATAGGACTT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTA 27762 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 || |||| ||||| || | |||| | || | ||| ||| |||||||||| ||| Sbjct 27761 GTGGTTAAGAGGGACAGACAGGGGCATTTGTGTGGCTGTGTTAGAAGTGAAATTCTGGGA 27702 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 | |||| | |||| |||||| | || | ||| | |||||||| ||||| || Sbjct 27701 TCGCCGCCAGACAAGCTACAGCGAAATCATTTGCTAAGAACGTTTTCATCGATCAG-GAG 27643 Query 306 CGAAAGTTAG 315 | ||||| || Sbjct 27642 CAAAAGTCAG 27633 >seq8571 Length=12573 Score = 89.7 bits (98), Expect = 9e-16 Identities = 122/161 (76%), Gaps = 11/161 (7%) Strand=Plus/Minus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCC-AGG--ACTTTTACTTTGAAAAAATT 90 |||| |||| ||| | |||||| |||||| | | || |||||||| || ||||| Sbjct 10183 TCCGGATGCTCTTGAACGGGTGTC---GGGAGCGGACGTCACCTTTACTTTAAACAAATT 10127 Query 91 AGAGTGTTCAAAGCAGGCCTTTGC-TC-GAATACATTAGCATGGAATAATAGAATAGGAC 148 |||| ||||| ||||||| || || ||| | ||||| ||||||||| ||| |||| Sbjct 10126 TGAGTACTCAAATCAGGCCTGTGTGTCTGAAAATTTTAGCTTGGAATAATGAAATTGGAC 10067 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATG 188 | |||||||||||||||||||| | ||| ||| |||||| Sbjct 10066 TT-CGGTTCTATTTTGTTGGTTT-TGGGATCCGAAGTAATG 10028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914814984512