Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5476 127 9e-27 seq6325 122 4e-25 seq621 109 2e-21 seq255 91.5 6e-16 seq7682 86.0 3e-14 >seq5476 Length=18070 Score = 127 bits (140), Expect = 9e-27 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 ||| ||||||||||||||||||||||| || ||| |||||||||||||||||||||| Sbjct 10048 TTGAGACCCGAAAGATGGTGAACTATGTTTGTGAAGGTTGAAGCCAGAGGAAACTCTGGT 9989 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || |||| ||||| ||||||||| ||||| || || |||||||||||| Sbjct 9988 GGAGGACCGTAGCGATTCTGAGGTGCAAATCAATCGTATAACGTGAGTATAGGGGCGA 9931 >seq6325 Length=16246 Score = 122 bits (134), Expect = 4e-25 Identities = 99/119 (83%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| ||||||||||| |||||||||||| || ||| ||||||||||||||| |||| Sbjct 2771 GTTGAGACCCGAAAGAAGGTGAACTATGCTTGTGAAGGTTGAAGCCAGAGGAAA--CTGG 2828 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | |||| || |||| ||||| |||||||||||||||| || || |||||||||||| Sbjct 2829 TAGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACGTGAGTATAGGGGCGA 2887 >seq621 Length=49352 Score = 109 bits (120), Expect = 2e-21 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||||| || |||| ||| ||||||||||||||||||| || ||| ||||||||| Sbjct 16537 AAGAGCGTACACGTTGAAACCTGAAAGATGGTGAACTATGCATGTGAAGGTTGAAGCCAG 16478 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660 |||||||||||||||||| | |||||||| | ||||| |||||||| Sbjct 16477 AGGAAACTCTGGTGGAGGACGGTAGCGGTTCCGACGTGCGAATCGATC 16430 >seq255 Length=62944 Score = 91.5 bits (100), Expect = 6e-16 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||||||||||||||||||||| || |||| ||||| |||||||||||||||| || Sbjct 4513 GCCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAAC 4454 Query 668 TTGGGTATAGGGGCG 682 || ||||||||||| Sbjct 4453 GTGAGTATAGGGGCG 4439 >seq7682 Length=13865 Score = 86.0 bits (94), Expect = 3e-14 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| || | ||| ||||||||||||||| ||||||||| Sbjct 10977 ACCCGAAAGATGGTGAACTATGCTTGTAAAGGTTGAAGCCAGAGGAAA--CTGGTGGAGA 11034 Query 631 CTCGCAGCGGTTCTGGCGTGCAAA 654 || ||| ||||| ||| |||| Sbjct 11035 ACCGTAGCAATTCTGACGTACAAA 11058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079097619950