Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq17028 549 5e-154 >seq17028 Length=5425 Score = 549 bits (608), Expect = 5e-154 Identities = 377/422 (89%), Gaps = 5/422 (1%) Strand=Plus/Minus Query 8 ACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCA 67 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4254 ACGCTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCTG 4195 Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4194 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 4135 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT--AGCTAA 185 |||||| |||||||||||||||||| ||||||||||||||||||||||| || ||| | Sbjct 4134 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCCTTGCGGCTGA 4075 Query 186 CCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 245 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4074 CCCCATCAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 4015 Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCAT 305 ||||||||||||||||||||| ||||||||||||||||||||||| || ||||| | | Sbjct 4014 TTTGCAGAGTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTACTGCGACCCTCTT 3955 Query 306 GAGCT-TACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364 |||| || ||| | | |||| | || ||||||||||||||||||||||||| Sbjct 3954 CAGCTATAGCTCGCACGAGC--CACCAAAAAGGGTGCACCTTCTCCCGAAGTTACGGTGC 3897 Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACC 424 | | ||||||||||||||| ||||||||||||||||||||| | |||||| || | || Sbjct 3896 CATGTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGAATTCTCATCCTACCC 3837 Query 425 AC 426 || Sbjct 3836 AC 3835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260269594048