Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq17028 269 6e-70 >seq17028 Length=5425 Score = 269 bits (298), Expect = 6e-70 Identities = 291/384 (76%), Gaps = 26/384 (7%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | |||| ||||||||| |||||| || ||||||| ||| ||||| Sbjct 4249 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCTGTCGTT 4190 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4189 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4130 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-ATTGC-TCTAACAGAT 184 |||||||||||||||||||||||||||| | | |||||| |||| || || Sbjct 4129 TAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCCTTGCGGCTGACCCCA 4070 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | |||||||||||||||||||||||||||| ||||||| || ||| || || || Sbjct 4069 TCAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 4010 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC------CTGTC 298 ||| ||||||||||| ||||||||||| ||||| | ||||| | | | Sbjct 4009 AGAGTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTACTGCGACCCTCTTCAGCT 3950 Query 299 ATAG-----AC-AGGCACC------------CCTTCTCCCTAAGTTACGGGGTCATTTTG 340 |||| || || |||| ||||||||| ||||||||| | ||| ||| Sbjct 3949 ATAGCTCGCACGAGCCACCAAAAAGGGTGCACCTTCTCCCGAAGTTACGGTGCCATGTTG 3890 Query 341 CCGAGTTCCTTAACAATAGTTCTC 364 || |||||||| || ||||||| Sbjct 3889 CCTAGTTCCTTCACCCGAGTTCTC 3866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061953058944