Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq17028 488 2e-135 >seq17028 Length=5425 Score = 488 bits (540), Expect = 2e-135 Identities = 413/501 (82%), Gaps = 9/501 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| |||||||||||||||||| || Sbjct 1124 TACGGTCGCAAGACTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGTAT 1183 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||||||||||||| |||||||| || | || Sbjct 1184 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGCCTTGACATGTCGAGAACTTTC 1243 Query 121 TAGAGATAGA--GGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 |||||| || ||| |||||||| || ||||||| ||||||| ||||||| Sbjct 1244 CAGAGATGGATTGGTG---CCTTCGGGAACTCGAAC-ACAGGTGCTGCATGGCTGTCGTC 1299 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1300 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCCTTAGTT 1359 Query 239 GCCATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGG 296 |||| || ||| | |||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 1360 GCCAGCACGTAATGGTGGGAACTCTAAGGAGACCGCCGGTGACAAACCGGAGGAAGGTGG 1419 Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| |||||||| |||||||| |||||| | ||||||||||||| ||||||||| Sbjct 1420 GGATGACGTCAAGTCATCATGGCCCTTACGGCCAGGGCTACACACGTACTACAATGGTAG 1479 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 ||| ||||| || | | |||| | |||| ||||||| ||| ||||||| ||| Sbjct 1480 GGACAGAGGGCTGCAAGCCGGCGACGGTAAGCCAATCCCAGAAACCCTATCTCAGTCCGG 1539 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCA-T 475 |||| |||||||||||||||| |||||| ||||||||||||||||| ||||||||| | Sbjct 1540 ATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGCAGATCAGCATT 1599 Query 476 GCTACGGTGAATACGTTCCCG 496 ||| ||||||||||||||||| Sbjct 1600 GCTGCGGTGAATACGTTCCCG 1620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503367282240