Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq35861 165 1e-38 seq2149 161 2e-37 seq3146 127 3e-27 seq3985 118 2e-24 seq6698 116 6e-24 seq314 116 6e-24 seq19234 95.1 2e-17 seq2496 93.3 7e-17 seq512 93.3 7e-17 seq31545 82.4 1e-13 seq3553 78.8 1e-12 seq1103 77.0 5e-12 >seq35861 Length=758 Score = 165 bits (182), Expect = 1e-38 Identities = 105/114 (92%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 145 TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACT 204 |||||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 370 TTTAGCAGATTAAAGTCTCGTTCGTTATCGGAATTAACCACACAAATCGCTCCACCAACT 429 Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| ||| | |||||||||||||||||||||||||| Sbjct 430 AAGAACGGCCATGCACCACTACCGACCAAATCAAGAAAGAGCTATCAATCTGTC 483 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/73 (84%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 5 CGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 64 || |||| || | | | |||||| |||| ||||| | |||||||||||||||||||||| Sbjct 99 CGCTGGCACCATTAATATAGCGCACGTGTGGCCCCGGCCATCTAAGGGCATCACAGACCT 158 Query 65 GTTATTGCCTCAA 77 ||||||| ||||| Sbjct 159 GTTATTG-CTCAA 170 >seq2149 Length=30883 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| | Sbjct 27240 CTATTTAGCAGGTTAAAGTCTTGTTCGTTATCGGAATTAACCAGACAAATCGCTCCATCG 27299 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||| Sbjct 27300 ACTAAGAACGGCCATGCTTCACCACCCACCGAATCAAAAAAGGGCTATCAATCTGTC 27356 Score = 89.7 bits (98), Expect = 8e-16 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 4 TCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 63 ||| |||| |||||| |||||| | |||| |||||| |||||||||||||||||||||| Sbjct 27032 TCGCTGGCACCGTCATTGTAGCACACGTGTAGCCCAGGACATCTAAGGGCATCACAGACC 27091 Query 64 TGTTATTGCCTCAA 77 |||||||| ||||| Sbjct 27092 TGTTATTG-CTCAA 27104 >seq3146 Length=25533 Score = 127 bits (140), Expect = 3e-27 Identities = 81/88 (92%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 2915 ATCGGAATTAACCAGACAAATCGCTCCACGAACTAAGAACGGCCATGCACCACCACCCAC 2974 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||||||||||||||| ||| || Sbjct 2975 CGAGTCAAGAAAGAGCTATCACTCTATC 3002 >seq3985 Length=22214 Score = 118 bits (130), Expect = 2e-24 Identities = 71/75 (95%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||| ||||||||||| ||||||||||||||| |||||||||||||||||| |||||||| Sbjct 5659 CTATCTAGCAGGTTAAAGTCTCGTTCGTTATCAGAATTAACCAGACAAATCGCTCCACCA 5600 Query 202 ACTAAGAACGGCCAT 216 ||||||||||||||| Sbjct 5599 ACTAAGAACGGCCAT 5585 >seq6698 Length=15536 Score = 116 bits (128), Expect = 6e-24 Identities = 96/117 (82%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||| ||| ||| ||||| ||||||||||| |||||||||||||||| || ||| Sbjct 5580 CTATTTTATAGGGTAAAGTCTCATTCGTTATCGGGATTAACCAGACAAATCGCTACAC-- 5523 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| |||| ||||||| || |||||| ||||||||||||||||||| Sbjct 5522 --TAAGAACGGTCATGGACCACCATTAATCAAATCAACAAAGAGCTATCAATCTGTC 5468 >seq314 Length=59671 Score = 116 bits (128), Expect = 6e-24 Identities = 82/94 (87%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||| |||| ||| ||||||||||||||| |||||||||||| ||||||||||||| Sbjct 38165 CTATTTAACAGGATAAAGTCTCGTTCGTTATCAGAATTAACCAGAATAATCACTCCACCA 38224 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||| ||||||| || ||| ||||||||| |||| Sbjct 38225 ACTTAGAACGGTCACGCATCACCACCCACCGAAT 38258 Score = 93.3 bits (102), Expect = 7e-17 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| |||| ||||| | |||||||||||||||||||| Sbjct 37955 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 38014 Query 62 CCTGTTATTGCCTCAA 77 | |||||||| ||||| Sbjct 38015 CTTGTTATTG-CTCAA 38029 >seq19234 Length=4354 Score = 95.1 bits (104), Expect = 2e-17 Identities = 73/86 (85%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT---GCACCACCA 225 |||||| ||||| |||| ||||| ||||||||||||||||||||||| |||||||| Sbjct 3110 TTATCGTTATTAAACAGATAAATCGCTCCACCAACTAAGAACGGCCATTTACCACCACCA 3051 Query 226 CCCATAGAATCAAGAAAGAGCTATCA 251 |||| ||||||||||| ||||| || Sbjct 3050 CCCACCGAATCAAGAAAAAGCTAACA 3025 >seq2496 Length=28786 Score = 93.3 bits (102), Expect = 7e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||| ||||| ||||||| |||| || |||||| |||| || Sbjct 11084 CTATTTAGCAGGTTAAAGTCTTGTTCGCCATCGGAACTAACTAGGCAAATCGATCCATCA 11025 Query 202 ACTAAGAACGGCCATGCACCACCA 225 | | |||||||||||| ||||||| Sbjct 11024 AATGAGAACGGCCATGAACCACCA 11001 >seq512 Length=52218 Score = 93.3 bits (102), Expect = 7e-17 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| ||||||||| || ||| ||||| |||||| ||| ||||| | Sbjct 11460 CTATTTAGCAGGTTAAAGTCTCGTTCTTTGTCGAAATTATTCAGACAGATCGCTCCAATA 11519 Query 202 ACTAAGAACGGCCATGCAC 220 ||||||||||| ||||||| Sbjct 11520 ACTAAGAACGGTCATGCAC 11538 >seq31545 Length=1160 Score = 82.4 bits (90), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| ||||||||||||||||||| |||||||| | | | ||| |||| Sbjct 745 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAAATAACCAGATATACCGCTCAACCA 686 Query 202 ACTAAG-AACGGCCATGCACCACC-ACCC 228 | |||| || | ||||| |||| |||| Sbjct 685 A-TAAGCAATTGTAATGCAGCACCGACCC 658 >seq3553 Length=23809 Score = 78.8 bits (86), Expect = 1e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| |||||| |||||||| |||| |||| | |||||||||||||||||||| Sbjct 15377 ACTCGCTGGTACCGTCATTGTAGCGCACGTGTGGCCTCGGACATCTAAGGGCATCACAGA 15318 Query 62 CCTGTTAT 69 ||||| || Sbjct 15317 CCTGTCAT 15310 >seq1103 Length=40619 Score = 77.0 bits (84), Expect = 5e-12 Identities = 62/74 (84%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 4 TCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 63 ||| |||| |||||| |||| || ||| | ||| |||||||||||| ||||||||||| Sbjct 6050 TCGCTGGCACCGTCATTGTACCGTATGTGTGACCCTGAACATCTAAGGACATCACAGACC 5991 Query 64 TGTTATTGCCTCAA 77 |||||||| ||||| Sbjct 5990 TGTTATTG-CTCAA 5978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796475269389