Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3634 132 8e-29 seq14322 125 1e-26 seq2751 102 1e-19 seq3858 100 5e-19 seq631 91.5 3e-16 seq17028 73.4 7e-11 >seq3634 Length=23491 Score = 132 bits (146), Expect = 8e-29 Identities = 109/134 (81%), Gaps = 8/134 (6%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||| | || | ||||||||||| |||| ||||| Sbjct 14569 TCATCAGTAGGGTAAAACTAACTT--------ACTATATAAACCCAGCTTACGTCCCCTA 14518 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||| |||||| ||| || ||| Sbjct 14517 TTAGTGGGTGAACAATCCAACGCTTGGTAGATTCTGCTTCATAATGATATGAACAGGCGA 14458 Query 151 CATCGAAGGATCAA 164 |||||||||||||| Sbjct 14457 CATCGAAGGATCAA 14444 >seq14322 Length=7089 Score = 125 bits (138), Expect = 1e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 ||||||||||||| ||||||||||||| |||||||| || ||| ||||| | || Sbjct 578 TATTAGTGGGTGACCAATCCAACGCTTGGTGAATTCTGTTTTTCAGTGAAAGGAAAAACC 637 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||||||| ||||||| || ||||||||| ||||||||| | |||||| |||||||| Sbjct 638 TACATCGAAGTATCAAAAGGCGACGTCGCTAGGAACGCTTGACCACCACAAACCAGTTAT 697 Query 209 CCCTGTGGT 217 | |||||| Sbjct 698 ACTTGTGGT 706 >seq2751 Length=27367 Score = 102 bits (112), Expect = 1e-19 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| ||||||||||| |||||| |||||| ||||||||||||| |||||||||| | | Sbjct 18809 CATTAGTAGGGTAAAGCTAACCGGTCTCACGACGGTCTAAACCTGGCTCACGTTCTTTGT 18750 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 | | ||||||||||||||| | | |||| |||||| ||||||| |||| Sbjct 18749 TGGAGGGTGAACAATCCAATGGTCTGTAAATTTTGCTTCACAATGATAGAAAGA 18696 >seq3858 Length=22663 Score = 100 bits (110), Expect = 5e-19 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||||||||||||||| |||||||| |||||||||||| ||||||||||||||| Sbjct 21399 TCATTAGTAGGGTAAAACTAAGCTGTCTCACGACGGTCTAAACATAGCTCACGTTCCCTA 21340 Query 91 TTAGTGGGTGAA 102 ||||| |||||| Sbjct 21339 TTAGT-GGTGAA 21329 Score = 89.7 bits (98), Expect = 9e-16 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 ||||| ||||||||||||||||||||| || |||||||||||||||||| || |||||| Sbjct 21080 AAGAGTCGACATCGAAGGATCAAAAAGTGACATCGCTATGAACGCTTGGCCGCTACAAGC 21021 Query 202 CAGTTAT 208 || |||| Sbjct 21020 CATTTAT 21014 >seq631 Length=49129 Score = 91.5 bits (100), Expect = 3e-16 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195 |||| |||||| |||||||||| |||||||||||||||||||||| ||| |||||| || Sbjct 36636 GATAAGAAGAGTCGACATCGAAAGATCAAAAAGCAACGTCGCTATAAACACTTGGCCACC 36695 Query 196 ACAAGCCAGTTAT 208 ||||| || |||| Sbjct 36696 ACAAGTCATTTAT 36708 >seq17028 Length=5425 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| || ||||| | || Sbjct 4847 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 4788 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||||| | | || | | ||| || ||||||||||||| | |||| | | Sbjct 4787 CTTGGGACCGACTACAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 4731 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| | ||| ||||| Sbjct 4730 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 4676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854040562464