Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq17028 437 2e-120 >seq17028 Length=5425 Score = 437 bits (484), Expect = 2e-120 Identities = 315/360 (88%), Gaps = 5/360 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| ||| ||||||| || ||||||||||||||| ||||| Sbjct 665 CTTTACAACCCGAAGGCCTTCTT-CACCCACGCGGTAT-GGCTGGATCAGGCTTGCGCCC 608 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 607 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 548 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||| | Sbjct 547 TGTGGCTGATCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCG 488 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||||||| | ||||||| || |||||||| |||||| |||||||||| Sbjct 487 CCAACTAGCTAATCCGACATCGGCTCATTCAATCGCGCAAGGTCCGAAGATCCCCTGCTT 428 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || |||||||| |||||||||||||||||| |||||| |||||||||||||| | | Sbjct 427 TCACCCGTAGGTCGTATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGAAAAA 368 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAA---GAGAAGCAAGCTTCTCT 357 | ||||||| | | ||| |||||||||||||| ||| | | || |||||||| |||| Sbjct 367 GTAGATTCCGATGTATTCCTCACCCGTCCGCCACTCGCCACCCAAGGAGCAAGCTCCTCT 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071549020320