Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq17028 275 2e-71 >seq17028 Length=5425 Score = 275 bits (304), Expect = 2e-71 Identities = 391/537 (73%), Gaps = 21/537 (4%) Strand=Plus/Minus Query 49 TCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATC-C 105 || ||| |||||||||||| || ||| |||||| | | | |||||||| |||| | Sbjct 3147 TCTCGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCGATGACCCCCTAG-CCATAAC 3090 Query 106 AGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 ||||||||||| ||| || || ||| || || |||||||| ||||| ||||||| Sbjct 3089 AGTGCTCTACCCCCGAGAGGATACATATGAGGCGCTACCTAAATAGCTTTCGAGGAGAAC 3030 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225 |||||||| | ||| |||| || |||||| |||| |||| ||||||||| ||| Sbjct 3029 CAGCTATCTCCGGGTTCGATTAGCTTTTCACTCCTAATCACACCTCATCCCCTACCTTTG 2970 Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGAT 285 |||| ||||||||||| |||||| || ||||| ||||| |||| |||| | Sbjct 2969 CAACGGGAGTGGGTTCGGGCCTCCAGTGCGTGTTACCGCACCTTCACCCTGGGCATGACT 2910 Query 286 AGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 ||||||| | ||||||||| | || ||| || |||||| || |||||| |||| Sbjct 2909 AGATCACCCGGTTTCGGGTCTACTGCCCGCGACT-ATGCGCCCTTATCAGACTCGGTTTC 2851 Query 346 GCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 || || || ||| | || |||||| || || || ||| || |||| | | |||| | Sbjct 2850 CCTTCGCCTCCCCTATAC-GGTTAAGCTTGCCAC-GAACAGTAAGTCGCTGACCCATTAT 2793 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 ||||||| |||| ||||| ||| || |||||| || | ||||| || Sbjct 2792 ACAAAAGGTACGCAGTCAC-----TCCT----TGC---GGAGCTCCTACTGCTTGTACGC 2745 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACG 524 ||| |||||||||| |||||||||||||| | | ||||| |||||| ||||||||||||| Sbjct 2744 ACACGGTTTCAGGTTCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACG 2685 Query 525 GTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCA 581 ||||| || | ||||||||| || ||||||||| ||| || ||||||| ||| Sbjct 2684 GTACTGGTTCACTATCGGTCGGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCA 2628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816835353856