Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq17028 394 2e-107 >seq17028 Length=5425 Score = 394 bits (436), Expect = 2e-107 Identities = 323/380 (85%), Gaps = 11/380 (3%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||| |||| || ||| |||| |||||| ||| ||||||| |||||||| || |||| Sbjct 2991 CACACCTCATCCC-CTACCTTTG-CAACGGGAGTGGGTTCGGGCCTCCAGTGCGT-GTTA 2935 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 || ||||| || |||| ||| | |||||| |||||||| |||||||| | ||| ||| Sbjct 2934 CCGCACCTT-CACCCTGGGCAT-GACTAGATCACCCGGTTT-CGGGTCTACTGCCC-GCG 2879 Query 130 ACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGC 189 |||| |||||| | ||||||| ||| | || |||||||||||| ||||||||||| || Sbjct 2878 ACTATGCGCCCTTATCAGACTCGGTTTCC-CTTCGCCTCCCCTATACGGTTAAGCTT-GC 2821 Query 190 CACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGG 249 ||| | | |||||||||||||||||||||||||||||||||||||| | | | | Sbjct 2820 CACGAACAGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACTC--CTTGCGGAG 2763 Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 2762 CTCCTACTGCTTGTACGCACACGGTTTCAGGTTCTATTTCACTCCCCTCTCCGGGGTTCT 2703 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 2702 TTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGGTCAGTAGTATTTAGCCTTGG 2643 Query 370 AGGATGGTCCCCCCATATTC 389 |||||||||||||||| ||| Sbjct 2642 AGGATGGTCCCCCCATGTTC 2623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241077671296