Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq20502 91.5 9e-17 seq3553 86.0 4e-15 seq314 86.0 4e-15 seq31545 82.4 5e-14 seq9198 77.0 2e-12 seq2171 71.6 8e-11 >seq20502 Length=3817 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||| | Sbjct 2648 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGATG 2705 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 2706 TAAT-CAGCGCAAGCT 2720 >seq3553 Length=23809 Score = 86.0 bits (94), Expect = 4e-15 Identities = 76/90 (84%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGT 92 |||||| | || | ||||||||| ||||| || ||||||||| |||||||||| |||| Sbjct 15579 GCCAATCC--AACGATCTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGCTGTGT 15524 Query 93 ACAAAGGGCAGGGACGTAATACAACGCAAG 122 | |||||||||||||||||| || |||||| Sbjct 15523 AAAAAGGGCAGGGACGTAAT-CAGCGCAAG 15495 >seq314 Length=59671 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| | ||||||||| |||||||||||||||||||| Sbjct 37769 CTCACTAAACCATT-CAATCGGTAGTA-GTGACGGGCGGTGTGTACAAAGGGCAGGGACG 37826 Query 109 TAATACAACGCAAGCT 124 | || || |||||||| Sbjct 37827 TGAT-CAGCGCAAGCT 37841 >seq31545 Length=1160 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||| || | ||| || ||| ||||| ||||||||||| |||||||||||||||||||| Sbjct 983 CTCACAAAACTATT-CAATCGATAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 926 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 925 TAAT-CAGCGCAAGCT 911 >seq9198 Length=11824 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||| | ||| || ||||||||| | ||||||||| |||||||||||||||||| | Sbjct 5858 CTCACTAGACTATT-CAATCGGTAGTA-GAGACGGGCGGTGTGTACAAAGGGCAGGGAAG 5801 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 5800 TAAT-CAGCGCAAGCT 5786 >seq2171 Length=30764 Score = 71.6 bits (78), Expect = 8e-11 Identities = 49/53 (92%), Gaps = 2/53 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGC 101 |||||||||||||| || ||||||||| ||||||||||| ||||||||||||| Sbjct 27344 CTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGC 27394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300681365420