Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq17028 181 2e-43 >seq17028 Length=5425 Score = 181 bits (200), Expect = 2e-43 Identities = 287/403 (71%), Gaps = 9/403 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59 |||||||| || ||| |||||||||||| ||||||||||| | || || ||| ||| Sbjct 3595 CGACTACGACTTTCGTCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATTAACGTTGCG 3536 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118 | |||| |||||| |||||| |||| || |||||| | || |||||||| | Sbjct 3535 CAAGGAAACCTTGGGCTTTCGGCGTGCGGGTTTTTCACCCGCATTATCGTTACTCATGTC 3476 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | | ||||| || || || | || ||||| | || || Sbjct 3475 AGCATTCGCACTTCCGATACCTCCAGCAGACT-TCTCAATCCACCTTCAACGGCTTACGG 3417 Query 178 GACGCTCCCCTACCCAACC-ACACAGGTTGCCAC---AGCTTCGGCGGATAACTTAAGCC 233 ||||||| ||||| | ||| || ||| | |||||||| | |||| ||| Sbjct 3416 AACGCTCCTCTACCGCGCATACAAAGTATGCACCCCAAGCTTCGGTTCACTGCTTA-GCC 3358 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| || || || ||| || ||| ||||||||||||||||||| ||||| |||| Sbjct 3357 CCGTTAAATCTTCCCCGCAGACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAGGG 3298 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| ||||||||||||||| ||||| || ||||||| ||| ||||| || Sbjct 3297 TGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCCTTTCCACATGGTTTTCCACTTAG 3238 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | || ||| ||||||||| | |||||| ||||||||| Sbjct 3237 CAGTGAATTTGGGACCTTAGCTGTGGGTCTGGGTTGTTTCCCT 3195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177104595456