Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq17028 443 5e-122 >seq17028 Length=5425 Score = 443 bits (490), Expect = 5e-122 Identities = 347/412 (84%), Gaps = 2/412 (0%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| Sbjct 665 CTTTACAACCCGAAGGCCTTCTTCACCCACGCGGTATGGCTGGATCAGGCTTGCGCCCAT 606 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 546 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||| Sbjct 545 TGGCTGATCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCGCC 486 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT- 242 ||||||||||||| | | || |||| | || | | ||| |||||| ||||| |||| Sbjct 485 AACTAGCTAATCCGACATCGGCTCATTCAATCGCGCAAGGTCCGAAGATCCCCTGCTTTC 426 Query 243 GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302 | | | || |||||||||||||| |||||| |||||||||| | | | | Sbjct 425 ACCCGTAGGTCG-TATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGAAAAAG 367 Query 303 CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC 362 || |||| | ||| ||||||||||||||||||| || | ||| |||||||| || Sbjct 366 TAGATTCCGATGTATTCCTCACCCGTCCGCCACTCGCCACCCAAGGAGCAAGCTCCTCTG 307 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || | |||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 306 TGCTGCCGTTCGACTTGCATGTGTTAGGCCTACCGCCAGCGTTCACTCTGAG 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221885748544