Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq17028 358 2e-96 >seq17028 Length=5425 Score = 358 bits (396), Expect = 2e-96 Identities = 319/397 (80%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| || Sbjct 730 AAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGTGCAAGCGTTACTCG 789 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| |||||||||||||| ||||||| | ||||||| | || Sbjct 790 GAATTACTGGGCGTAAAGCGTGCGTAGGTGGTTATTTAAGTCCGTTGTGAAAGCCCTGGG 849 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 ||||||| || ||||| | || |||| | | ||||| || | || || || ||||| Sbjct 850 CTCAACCTGGGAACTGCAGTGGATACTGGATGACTAGAATGTGGTAGAGGGTAGCGGAAT 909 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 |||| ||||||| |||||||||||||| || |||||||||| | |||||||||| ||| Sbjct 910 TCCTGGTGTAGCAGTGAAATGCGTAGAGATCAGGAGGAACATCCATGGCGAAGGCAGCTA 969 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||||| | |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 970 CCTGGACCAACATTGACACTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 1029 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTC-CGGTG 371 |||||||||||||| ||||||||| ||| | ||| ||| ||| || | | || Sbjct 1030 TGGTAGTCCACGCCCTAAACGATGCGAACTGGATGT-TGGGTGCAATTTGGCACGCAGTA 1088 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || ||| ||||| ||||| || ||||||||||| Sbjct 1089 TCGAAGCTAACGCGTTAAGTTCGCCGCCTGGGGAGTA 1125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202693825792