Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq314 152 1e-34 seq2149 141 2e-31 seq3553 111 3e-22 seq35861 91.5 3e-16 seq20502 89.7 1e-15 seq1103 73.4 7e-11 >seq314 Length=59671 Score = 152 bits (168), Expect = 1e-34 Identities = 168/221 (76%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||| ||||||||||||||||||||| | ||||| |||| |||||||| | Sbjct 38029 TTGAG-CAATAACAAGTCTGTGATGCCCTTAGATGTCCGGGGCCACACGTGCGCTACAAT 37971 Query 169 GACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT 227 ||| | |||| ||||| | |||| | | |||| |||| || || || | | | Sbjct 37970 GACGGTGCCAGCGAGTCTGGAAACCTGGCATGAAAGGGTTGGGCAAACTGTTTCAGCACC 37911 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 ||||| | ||| ||| ||||||||||| | | | |||||||||| ||| || || | Sbjct 37910 ATCGTGACTGAGATCGAGGCTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTGAGTG 37851 Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||| |||| |||||||||||||||||| Sbjct 37850 CAAGTCATAAGCTTGCGCTGATCACGTCCCTGCCCTTTGTA 37810 >seq2149 Length=30883 Score = 141 bits (156), Expect = 2e-31 Identities = 194/263 (74%), Gaps = 11/263 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCG-ATGGAAGTTTGAGGCAATAACAGGTC 126 ||||||| |||||| | |||| || ||||| ||| || ||||| |||||||||||| Sbjct 27144 CTTCTTATAGGGACAAGCGGCACACTTAAGCCGCATGAAA--TTGAG-CAATAACAGGTC 27088 Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-T 185 |||||||||||||||||| |||||| |||| | |||||| |||| | |||| ||| | | Sbjct 27087 TGTGATGCCCTTAGATGTCCTGGGCTACACGTGTGCTACAATGACGGTGCCAGCGAATCT 27028 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG-CTGGGGATAGA 244 |||| || |||| |||| || || || | | |||||| ||| | || Sbjct 27027 GGAAACCTGACTCGAAAGGATTGGGCAAACTGTTTCATCATCGTCGTGACTGAGATCAGG 26968 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 || ||||||||||| | | | |||||||||| ||| ||||| | ||||| ||| || Sbjct 26967 GC-TTGCAATTATTCCCCATAAACGAGGAATTCCTGGTAAGTGGAAGTCATAAGCTTGCA 26909 Query 305 TTGATTACGTCCCTGCCCTTTGT 327 |||||||||||| || ||||| Sbjct 26908 CTGATTACGTCCCCGCTTTTTGT 26886 >seq3553 Length=23809 Score = 111 bits (122), Expect = 3e-22 Identities = 157/216 (73%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 117 ATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC 176 || ||||||||||||||||||||||||| | |||| |||| |||||||| |||| | | Sbjct 15310 ATGACAGGTCTGTGATGCCCTTAGATGTCCGAGGCCACACGTGCGCTACAATGACGGTAC 15369 Query 177 CAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG-C 234 || ||||| | |||| | || || |||| || || || | | | |||||| | Sbjct 15370 CAGCGAGTCTGGAAACCTGGCCCAAAAAAGTTGGGAAAACTGTTTCATCACCGTCGTGAC 15429 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA--GTAAGCGCGTGT 292 || | | |||| ||||| ||||| | | | |||||||| | || ||||| || || Sbjct 15430 TGAGATTGGAGC-TTGCATTTATTCCCCGTGAACGAGGAGTTTTTATGGTAAGTGCAGGT 15488 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || | | ||| |||||||||||||||||||| || Sbjct 15489 GATAAACTTGCGCTGATTACGTCCCTGCCCTTTTTA 15524 >seq35861 Length=758 Score = 91.5 bits (100), Expect = 3e-16 Identities = 125/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| ||||||||||||||||||||||||||||| | ||||| |||| |||||| | | Sbjct 170 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGGCCGGGGCCACACGTGCGCTATATT 112 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCT-GGGTAATCTTGTTAAACTCT 227 | | |||| || | |||| |||| ||| || | ||| || || || | | | Sbjct 111 AATGGTGCCAGCGTTCTGGAAACCT-GGCCTGAAAGTGTTGGGCAAACTGTTTCATCACC 53 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 278 |||||| || || | | ||||||||||| | | | |||||||||| || Sbjct 52 GTCGTGACTGGAATTGTGGCTTGCAATTATTCCCCGTGAACGAGGAATTCC 2 >seq20502 Length=3817 Score = 89.7 bits (98), Expect = 1e-15 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 194 TGGCCGGAAGGTCT-GGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||| ||| || | ||| || || || | | | |||||| ||||| | | ||||| Sbjct 2824 TGGCCCGAAAGTGTTGGGCAAACTGTTTCATCACCGTCGTGACTGGGATCGGGGCTTGCA 2765 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 |||||| | | | ||||| |||| ||| ||||| || ||||| ||| ||| ||||||| Sbjct 2764 ATTATTCCCCGTGAACGAAGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCTGATTAC 2705 Query 313 GTCCCTGCCCTTTGTA 328 ||||||||||||||| Sbjct 2704 ATCCCTGCCCTTTGTA 2689 >seq1103 Length=40619 Score = 73.4 bits (80), Expect = 7e-11 Identities = 90/119 (76%), Gaps = 8/119 (7%) Strand=Plus/Plus Query 69 CGGCTTCTTAGAGGGACTATCGGCTC----AAGCCG-ATGGAAGTTTGAGGCAATAACAG 123 || ||||||| |||||| | ||| | ||| | ||| || ||||| ||||||||| Sbjct 5935 CGACTTCTTAAAGGGACAAGTGGCACGTTTAAGTTGCATGAAA--TTGAG-CAATAACAG 5991 Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182 |||||||||| |||||||||||| ||| | ||| || |||| |||| | |||| ||| Sbjct 5992 GTCTGTGATGTCCTTAGATGTTCAGGGTCACACATACGGTACAATGACGGTGCCAGCGA 6050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946801522432