Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq17028 372 1e-100 >seq17028 Length=5425 Score = 372 bits (412), Expect = 1e-100 Identities = 431/568 (76%), Gaps = 21/568 (4%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| | |||||| || |||||||||||||| |||||||| ||| Sbjct 2856 CGAGTCTGATAAGGGCGCATAGTCGCGGGCAGTAGACCCGAAACCGGGTGATCTAGTCAT 2915 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | ||||| ||||||||||||||||||| ||||||| ||||||||||| |||| ||| Sbjct 2916 GCCCAGGGTGAAGGTGCGGTAACACGCACTGGAGGCCCGAACCCACTCCCGTTGCAAAGG 2975 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||||||| |||| |||| |||||| ||||| | ||| ||| ||||||||||||| Sbjct 2976 TAGGGGATGAGGTGTGATTAGGAGTGAAAAGCTAATCGAACCCGGAGATAGCTGGTTCTC 3035 Query 181 TCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 ||||| |||||||||||| ||||| | ||||| | ||||||||||||||||||||| Sbjct 3036 CTCGAAAGCTATTTAGGTAGCGCCTCATATGTATC-CTCTCGGGGGTAGAGCACTGTTAT 3094 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAAT-GCGCATCAGTTTT 297 |||||||||||||| ||||||||||||||||||||||||||||||| || | | | Sbjct 3095 GGCTAGGGGGTCATCGCGACTTACCAAACCATTGCAAACTCCGAATACCGAGACGGACTG 3154 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | | || | ||| ||||||||| |||||| | ||| || || || ||| Sbjct 3155 TATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 3212 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||| ||| || | || ||||||| || ||| | || | || ||||| Sbjct 3213 CACAGCTAAGGTCCCAAATTCACTGCTAAGTGGAA--AACCATGTGGAAAGGCACAGACA 3270 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || |||| |||||||| |||||||||| | |||||||| |||||| |||||||| ||| Sbjct 3271 GCCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGGTC 3329 Query 478 GAGGAGTCGG---GCGTGG-ATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGG- 532 ||||||| ||| || | | | | |||| |||| || |||||||| ||| Sbjct 3330 ---GAGTCGGTCTGCGGGGAAGATTTAACGGG-GCTAAGCAGTGAACCGAAGCTTGGGGT 3385 Query 533 --ATCATTTATATGATCGGTAGGGGAGC 558 || ||| |||| |||||| ||||| Sbjct 3386 GCATACTTTGTATGCGCGGTAGAGGAGC 3413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688889202176