Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq17028 190 4e-46 >seq17028 Length=5425 Score = 190 bits (210), Expect = 4e-46 Identities = 199/257 (77%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| |||||||||||||||| | | |||||||||||||||| | ||| ||||| | Sbjct 2336 AGCGCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAA 2395 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 || ||||||| |||| || |||||||||| || ||||||||||||||||| | Sbjct 2396 AGTATCGGGGAGCTGGCAA-CAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCCACC 2454 Query 121 CCTTTG-GGTCATTGCATGC--TGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGA 177 | ||| || || | ||| ||||||||||| | |||||||| || ||||||| Sbjct 2455 CGCTTGCGGGTAT--CCTGCAGTGAATACATAGCTGCTGGAAGCGAACCTGGTGAACTGA 2512 Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237 || ||||||||| | ||||||||||||||||||||||||| |||||| | ||||||| Sbjct 2513 AATATCTAAGTAACCAGAGGAAAAGAAATCAACCGAGATTCCGTAAGTAGCGACGAGCGA 2572 Query 238 AATGGGATGAGCCTTTA 254 | ||| |||| ||| Sbjct 2573 ACGCGGACTAGCCCTTA 2589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918013638304