Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq39381 293 8e-77 seq3387 226 9e-57 seq27030 176 1e-41 seq35287 163 9e-38 seq33104 152 2e-34 seq6388 150 6e-34 seq12641 147 7e-33 seq5663 145 2e-32 seq24933 143 9e-32 seq40786 113 1e-22 seq33687 105 2e-20 seq1716 105 2e-20 seq30190 102 3e-19 seq1084 87.8 6e-15 seq17305 84.2 7e-14 seq6796 84.2 7e-14 seq36073 82.4 2e-13 seq9596 77.0 1e-11 seq1328 77.0 1e-11 seq15413 75.2 4e-11 >seq39381 Length=633 Score = 293 bits (324), Expect = 8e-77 Identities = 226/269 (84%), Gaps = 11/269 (4%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC------ 228 ||| |||| ||| |||||||| |||| || | | |||||||||||| |||||| Sbjct 351 CCGTTTCACTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTTGCGCTGGACA 410 Query 229 -CGAAACG----GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 |||| | ||||||| ||| ||||| | ||| ||| ||| || ||| ||||| Sbjct 411 CCGAAGCACCCAGCTCCCATCTATACTACATCCATCATGTCTCCTCATAATGTCAGACTA 470 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||| | |||||||||||||||||| |||||| |||| ||||||||||||||||||||| Sbjct 471 GAGTCCAACTCAACAGGGTCTTCTTTTCCCGCTAATTCTGCCAAGCCCGTTCCCTTGGCT 530 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 531 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATACGCGT 590 Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||| ||||||||||||| Sbjct 591 CACTAATTAGATGACTAGGCATTTGGCTA 619 >seq3387 Length=24534 Score = 226 bits (250), Expect = 9e-57 Identities = 217/275 (79%), Gaps = 16/275 (6%) Strand=Plus/Minus Query 170 CAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC- 228 |||| ||| |||| ||| ||| ||| || | || | ||||||| |||| |||||| Sbjct 14799 CAGTCCCGTTTCACTGAATAAACAAACAATGG-TA---GCAGTGGTACTTCATTTGCGCT 14744 Query 229 ------CGAAACG----GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||||| |||| || ||| ||||| ||||||| | ||| ||| || Sbjct 14743 AGGCACCGAAACACCCAGCTCTTACCTATACTACATTCATCAAGTCTTCTCATAAATTCA 14684 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||||||||||||||| ||||||||||| ||||| || |||| | |||||| |||| || Sbjct 14683 GACTAGAGTCAAGCTAAACAGGGTCTTATTTCCTCGTGAATTCTGTCAAGCCTGTTCTCT 14624 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAAT-CCATTCAT 397 |||||||| ||||||||||||||| ||||||||||||||||||||||||| | |||||| Sbjct 14623 TGGCTGTGACTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTAATACAATTCAT 14564 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 | |||||||||||||||||||||| |||||||||| Sbjct 14563 GTGCGTCACTAATTAGATGACGAGTCATTTGGCTA 14529 >seq27030 Length=1877 Score = 176 bits (194), Expect = 1e-41 Identities = 99/100 (99%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1747 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACT 1806 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||||||||||||||||||||||||||||| Sbjct 1807 TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 1846 >seq35287 Length=794 Score = 163 bits (180), Expect = 9e-38 Identities = 93/95 (98%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 593 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTTACTTTGAC 652 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||||||||||||| |||||||||| Sbjct 653 ATTCAGAGCACTGGGCAGAAATCATATTGCGTCAA 687 >seq33104 Length=987 Score = 152 bits (168), Expect = 2e-34 Identities = 87/89 (98%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114 GTAATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 55 Query 503 AGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||| ||||| Sbjct 54 AGCACTGGGCAGAAATCACATTGTGTCAA 26 >seq6388 Length=16135 Score = 150 bits (166), Expect = 6e-34 Identities = 91/96 (95%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 5795 TAAGAAAGTCATAGTTACCCCCACCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 5736 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||| |||||| ||||||||||||| Sbjct 5735 CATTCAGAGCACTGGACAGAAACCACATTGCGTCAA 5700 >seq12641 Length=8357 Score = 147 bits (162), Expect = 7e-33 Identities = 90/96 (94%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| || Sbjct 7243 GAGTTATAGTTACTCCTGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGACACTC 7184 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||| ||||||||||||||||||||| |||| Sbjct 7183 AGAGCACTGTGCAGAAATCACATTGCGTCAAAATCA 7148 >seq5663 Length=17677 Score = 145 bits (160), Expect = 2e-32 Identities = 85/88 (97%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 13578 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTTAATTTCTTCACTTTGACATTCAGA 13637 Query 504 GCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||| |||||||||||| Sbjct 13638 ACACTGGGCAGAAATTACATTGCGTCAA 13665 >seq24933 Length=2378 Score = 143 bits (158), Expect = 9e-32 Identities = 88/94 (94%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 |||| ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| Sbjct 2118 AGAGGGTCATAGTTACTCACGCCGTTTACCCGCGCTCGGTTGAATTTCTTCATTTTGACA 2177 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||| ||||||||||||||||| |||||||||| Sbjct 2178 TTCAGGGCACTGGGCAGAAATCATATTGCGTCAA 2211 >seq40786 Length=563 Score = 113 bits (124), Expect = 1e-22 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 561 TTTACCCGCACTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTAGGCAGAAATAAC 502 Query 522 ATTGCGTCAA 531 |||||||||| Sbjct 501 ATTGCGTCAA 492 >seq33687 Length=927 Score = 105 bits (116), Expect = 2e-20 Identities = 58/58 (100%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 870 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 927 >seq1716 Length=34216 Score = 105 bits (116), Expect = 2e-20 Identities = 109/142 (77%), Gaps = 8/142 (6%) Strand=Plus/Plus Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 ||| | |||||||| |||||||||| |||| || |||||||| || ||||| Sbjct 2982 TCAGAGAGTCGGACAAGAGTCAAGCCTAACACAGTTTTCTTTCCT-----AT---GCCAA 3033 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 |||| || | ||||||| ||||| |||||||||||||| ||||||||| ||||||| | Sbjct 3034 GCCCATTACTTTGGCTGAGGTTTTGCTAGATAGTAGATGGGGACAGTGATAATCTCGGTT 3093 Query 388 ATCCATTCATGCGCGTCACTAA 409 | || |||||| | || |||| Sbjct 3094 ACCCGTTCATGTACATCGCTAA 3115 >seq30190 Length=1318 Score = 102 bits (112), Expect = 3e-19 Identities = 56/56 (100%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTT 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 56 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTT 1 >seq1084 Length=40896 Score = 87.8 bits (96), Expect = 6e-15 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||| ||||| ||| || | ||| ||||| |||||||||| ||||||| Sbjct 1654 GCTCCCACTTATACTACATTCATCATATCTTCTCATAAAGTTGGACTAGAGTTAAGCTCA 1595 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTC 321 |||||||||||| |||||| | |||| Sbjct 1594 ACAGGGTCTTCTGTCCCCGTTAATTC 1569 >seq17305 Length=5271 Score = 84.2 bits (92), Expect = 7e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGAC 371 |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 4508 GCCAAGCCCGTTCCCTTGGCTGTGGTTTAGCTAGATAGTAGATAGGGAC 4556 >seq6796 Length=15363 Score = 84.2 bits (92), Expect = 7e-14 Identities = 114/156 (73%), Gaps = 11/156 (7%) Strand=Plus/Plus Query 172 GTTCC-GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG 230 ||||| | |||| ||| |||||||| |||| || | | |||||||||||| |||||| | Sbjct 2086 GTTCCTGTTTCACTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTTGCGCTG 2145 Query 231 AA-ACGG---CTCCCACTT------ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGA 280 || | | |||| || || ||||| ||| ||| ||||||| ||||| Sbjct 2146 GGCACAGAAGCACCCATTTTCACATATACTACATTCATCATGTCTCCTCACAAAATCGGA 2205 Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCT 316 |||| ||||||||||||||| | ||||||| |||| Sbjct 2206 CTAGGGTCAAGCTCAACAGGATATTCTTTCGTCGCT 2241 >seq36073 Length=747 Score = 82.4 bits (90), Expect = 2e-13 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 50 AATTAGATGACGAGGCATTTGGCTACCTTGGGAGAGTCATAGTTACTCCC 1 >seq9596 Length=11321 Score = 77.0 bits (84), Expect = 1e-11 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 |||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 780 AATTAGATGATGAGGCATTTGGCTACCTTGGGAGAGTCATAGTTACTCCC 731 >seq1328 Length=37997 Score = 77.0 bits (84), Expect = 1e-11 Identities = 51/56 (91%), Gaps = 3/56 (5%) Strand=Plus/Plus Query 408 AATTAGATGAC---GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 || || ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 37003 AACTACATGACAATGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 37058 >seq15413 Length=6355 Score = 75.2 bits (82), Expect = 4e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 331 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGAC 371 ||||||||||||||||||||||||||||||||||||||||| Sbjct 2278 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGAC 2318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634512087712