Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq17028 260 5e-67 >seq17028 Length=5425 Score = 260 bits (288), Expect = 5e-67 Identities = 288/379 (76%), Gaps = 11/379 (3%) Strand=Plus/Minus Query 187 CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCA 246 ||| |||||||||||| | | |||||| | |||||| | | |||||| |||||| Sbjct 4394 CAGGGTGGTATTTCAAGGATGGCTCCACTGCAGCTAGCGCCACAGTTTCATAGCCTCCCA 4335 Query 247 CCTATCCTACACAAACCGCACCGAATGC-CAATACCAAGCTATAGTGAAGGTCC-CGGGG 304 ||||||||||||| || | || || | || | |||||||||| ||||| | ||||| Sbjct 4334 CCTATCCTACACAGAC-GAACTCAACGTTCAGTGTAAAGCTATAGTAAAGGTTCACGGGG 4276 Query 305 TCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCT 364 ||||| |||| |||| || ||| ||||||| || | | ||||||||| | | || Sbjct 4275 TCTTTCCGTCTTGCCACGGGAACGCTGCATCTTCACAGCGATTTCAATTTCACTGAGTCT 4216 Query 365 GTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 424 ||| |||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 4215 CGGGTGGAGACAGCGCCGCTGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 4156 Query 425 GGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTA 484 |||||||||||||||||||| ||||||||||| |||||||||||||||||||| || | Sbjct 4155 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCA 4096 Query 485 CCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAG 544 || || | | || ||| || | |||||||||||||||||||||| Sbjct 4095 AGAGCTTCGC------CTTG--CGGCTGACCCCATCAATTAACCTTCCAGCACCGGGCAG 4044 Query 545 GCGTCAGTCCGTATACCTC 563 |||||| || ||||| || Sbjct 4043 GCGTCACACCCTATACGTC 4025 Score = 109 bits (120), Expect = 2e-21 Identities = 115/150 (77%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72 ||| |||||||||| | ||| ||| || ||| || | ||| || ||| |||||| Sbjct 4598 TCTTGCAGTCAAGCACGCTTATGCCTTTGCACACAGTGCGCGATGTCCGACCGCGCTGAG 4539 Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132 | ||||| | || |||||||||| ||| ||||| | |||||||||| |||||||||| Sbjct 4538 CGTACCTTCGAGCTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAGTCAAACTACCCA 4480 Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGG 162 ||| ||| |||||| |||||||| ||||| Sbjct 4479 CCATACACGGTCCCCGACCCAGATAATGGG 4450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701683817344