Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq17028 203 7e-50 >seq17028 Length=5425 Score = 203 bits (224), Expect = 7e-50 Identities = 219/288 (76%), Gaps = 13/288 (5%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCA--CAC 58 ||||||||||||| ||||||||| ||||||||| | ||||| || ||||| || Sbjct 758 GGCTGCTGGCACGAAGTTAGCCGGTGCTTATTCTTTGGGTACCGTCA---TCCCAACCAG 702 Query 59 GT-------GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCAT 111 || || || ||| || || | ||||| ||||||| ||| || ||||| | Sbjct 701 GTATTAGCCGGCTGGATTTCTTTCCCAACAAAAGGGCTTTACAACCCGAAGG-CCTTCTT 643 Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171 | ||||| ||||||| |||| || || |||||| |||||||||| ||||||||| Sbjct 642 CACCCACGCGGTATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGC 583 Query 172 CTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 ||||||||||||| |||||||||||||||||||| ||||| || | |||||||||| | Sbjct 582 CTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAGACCA 523 Query 232 CCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| | || |||||||| |||||||||| |||| ||||| Sbjct 522 GCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCGCCAACTAGCTAAT 475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068350366528