Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq12381 178 1e-39 seq13135 118 8e-22 >seq12381 Length=8583 Score = 178 bits (196), Expect = 1e-39 Identities = 515/786 (66%), Gaps = 10/786 (1%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | |||||||| || || | ||| | |||| | || || ||||| | | Sbjct 6864 CGCTTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAGAAGGCTGTA 6805 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || || || ||||| ||||| ||||| ||||| |||||||| | | | |||||| | Sbjct 6804 GCCTCTTTTTGGACTGTGGAAGAGGTGGATTTATCCAAAGATCTCATACATTGGGAGTCT 6745 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 ||| || |||| |||||||| | ||||| || |||||||| || ||| Sbjct 6744 TTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCGGCAAGTGAC 6685 Query 61234 GGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCG 61293 || || ||| ||||| | ||||||| ||| || || || || | | |||| Sbjct 6684 GGCATTGTCCTCGAGAACCTCCTGGAACGCTTCAGTCAAGAAGTCCAGATTCCAGAGGTT 6625 Query 61294 CGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTT 61353 ||||||||||| || | ||||| || || |||||| | ||||| || |||||| | | Sbjct 6624 CGTTGTTTCTATGGAATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTTA 6565 Query 61354 CTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAG 61413 | || ||||| ||||||| || ||| | || | ||||| ||||| Sbjct 6564 TTAATTGATACATACATCAAAGACTCTAAAGAAAGGGACTTTCTCTTCAACGCCATAAGC 6505 Query 61414 ACGATACCGGCGGTGAAGCGGAAA--GCGGATTGGGCCTTCAATTGGATCACCAGTACAA 61471 | || | ||| || ||| || | ||||| || ||||||| | | | Sbjct 6504 AACTTAAC--TTGTGTTGCTAAAAAGGCTCAGTGGGCATTAGATTGGATTGGTGATTCTA 6447 Query 61472 CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTG 61531 |||| |||| ||||| || | || ||||| | || || ||||| ||||| || Sbjct 6446 AATCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTG 6387 Query 61532 GATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCA 61591 | ||||| || || || ||| | |||||||| || |||||||| || ||| | || | Sbjct 6386 GTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTA 6327 Query 61592 GCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCA 61651 ||||||| || || | ||||| || | ||||||||||| ||| | | | || | Sbjct 6326 GCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTGTTTA 6267 Query 61652 AACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTG-TGGGTGAGATTGTTCGTGAGGCG 61710 ||| || | | || || | | || |||| || || | || | | |||||| Sbjct 6266 AAC---ATATTATCAAAAAGCCTCCCAAAGAACGTGTTGAGTCA-ATAATAAGAGAGGCG 6211 Query 61711 GTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAAT 61770 || || |||||||| ||| | | || || | || ||| | || || |||||| Sbjct 6210 GTTCTGATAGAACAGGAGTTTTTATCCGAAGCCCTACCAGTCAGCTTAATTGGGATGAAT 6151 Query 61771 TGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGG 61829 || ||| |||| ||||||||||||||| | || ||| | || |||| | | |||| Sbjct 6150 TGCAAACTGATGTGTCAGTATATTGAATTTATCGCTGACAGGCTACTGGTTGAACTTGGT 6091 Query 61830 TATGAA 61835 |||||| Sbjct 6090 TATGAA 6085 >seq13135 Length=7929 Score = 118 bits (130), Expect = 8e-22 Identities = 219/319 (69%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 66223 ACCTTTGCGTTCGTAATGTTCGTAGAG-GTGTTCGAAGGATTCACCCCATACTTCGGACA 66281 ||||| || || || | ||| || | |||| |||| ||||||||||||||| | || Sbjct 6422 ACCTTCACGCTCATATTTTTCATACAAAGTGT-CGAAATCTTCACCCCATACTTCAGGCA 6364 Query 66282 GACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCA 66341 | |||||||| || ||| ||| || | ||| | | | | ||| || || |||| Sbjct 6363 AGCCTGGACACTCATGAGGATCCATGAGTGTCCACTTATCGTTGGATTCAACGCGGCGCA 6304 Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401 | || | ||||||||||||||||| |||| | || ||||| || || || || Sbjct 6303 TGAACAAGTCAGGTATCCAGAGGGCAAAGAACAAGTCCCGTGCACGAATTTCTTCGGCGC 6244 Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461 | |||||| |||| || | ||||| ||| | || | ||||| ||||| | ||| | Sbjct 6243 CAGTATTTTTCCGCATTTCTATGAACTGAAACACATCAGGGTGCCAAGGTTCTAAGTACA 6184 Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521 |||| || | || ||| ||| || ||||||||||| || || || | |||| Sbjct 6183 TGGCAAAGGCTCCTGGACGCTTGTTACCTCCTTGGTCGACATATCGCGCAGTGCTATTGA 6124 Query 66522 AGACACGCAACATCGGTAC 66540 | || ||||||||||| || Sbjct 6123 ATACGCGCAACATCGGGAC 6105 Score = 116 bits (128), Expect = 3e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 66010 AAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGT 66069 || ||| || | || ||||||||| | ||||| || | | |||||| || ||||| || Sbjct 7105 AATAGAAGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGT 7046 Query 66070 GCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGC 66129 ||| ||||| ||||| || || ||||| | || ||| ||||| || |||||||| | Sbjct 7045 GCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGA 6986 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 ||||||||||| |||| | ||| |||| || |||| || | ||||| || |||| || Sbjct 6985 ATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACC 6927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397364160550160