Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_003219.1 Length=1911 Score E Sequences producing significant alignments: (Bits) Value seq9554 114 2e-22 seq9292 80.6 3e-12 >seq9554 Length=84635 Score = 114 bits (126), Expect = 2e-22 Identities = 210/308 (68%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 1182 GAAGATTATGAATTCAAATACAAAACAATGGCCATCATCAGCATCTTAGAAATGCAGGCT 1241 |||||||| || || || | |||| ||||| || || | || |||||| || Sbjct 2028 GAAGATTACGACTTTAAGTTCAAAGTTATGGCACTCTACATGGTTTTCAAAATGCTCGCC 2087 Query 1242 GGTAAAACTAATGTAATATTAATGGTAGGTAAACCCAATTGCGGTAAATCCCTCTTTTGC 1301 || ||||| || || | | | || ||||||||||| || |||||||| || || | Sbjct 2088 GGGAAAACAAACGTTGTCATCTTTGTTGGTAAACCCAACTGTGGTAAATCACTGTTAATC 2147 Query 1302 AATGTCTTATGCGCTGGACTCAAGACAGGAGCCGCTCATTCAATGAATAGTAGATCTAAT 1361 ||| | ||||| || || | || || || || || ||| | || |||| | || | Sbjct 2148 AATATGTTATGTGCGGGTTTAAATACCGGTGCAGCACATAGTAAGAGTAGTCGTTCACAG 2207 Query 1362 TTCTGGTTACAAGACTTACAGGGAAAGGATATCTATGTTTTCGAGGAATTCTCTATGGAT 1421 || |||| ||| || || ||||| ||||||||||| || || || || | ||||| Sbjct 2208 TTTTGGTAACAGGATCTAGCAGGAAAAGATATCTATGTATTTGAAGAGTTTGCAATGGAC 2267 Query 1422 GTATTTAATGCTAATTACTTTAAAGCCCTATTGGAGGGTAGTATGCATGTAATGGTTGAA 1481 || ||||| |||||||||| ||||| | |||| | | ||| | |||| ||| Sbjct 2268 ATAGTTAATTGCGATTACTTTAAGGCCCTTCTTGAGGATTCGAATCATATCATGGCTGAG 2327 Query 1482 AAGAAGAA 1489 |||||||| Sbjct 2328 AAGAAGAA 2335 Score = 114 bits (126), Expect = 2e-22 Identities = 210/308 (68%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 1182 GAAGATTATGAATTCAAATACAAAACAATGGCCATCATCAGCATCTTAGAAATGCAGGCT 1241 |||||||| || || || | |||| ||||| || || | || |||||| || Sbjct 4909 GAAGATTACGACTTTAAGTTCAAAGTTATGGCACTCTACATGGTTTTCAAAATGCTCGCC 4968 Query 1242 GGTAAAACTAATGTAATATTAATGGTAGGTAAACCCAATTGCGGTAAATCCCTCTTTTGC 1301 || ||||| || || | | | || ||||||||||| || |||||||| || || | Sbjct 4969 GGGAAAACAAACGTTGTCATCTTTGTTGGTAAACCCAACTGTGGTAAATCACTGTTAATC 5028 Query 1302 AATGTCTTATGCGCTGGACTCAAGACAGGAGCCGCTCATTCAATGAATAGTAGATCTAAT 1361 ||| | ||||| || || | || || || || || ||| | || |||| | || | Sbjct 5029 AATATGTTATGTGCGGGTTTAAATACCGGTGCAGCACATAGTAAGAGTAGTCGTTCACAG 5088 Query 1362 TTCTGGTTACAAGACTTACAGGGAAAGGATATCTATGTTTTCGAGGAATTCTCTATGGAT 1421 || |||| ||| || || ||||| ||||||||||| || || || || | ||||| Sbjct 5089 TTTTGGTAACAGGATCTAGCAGGAAAAGATATCTATGTATTTGAAGAGTTTGCAATGGAC 5148 Query 1422 GTATTTAATGCTAATTACTTTAAAGCCCTATTGGAGGGTAGTATGCATGTAATGGTTGAA 1481 || ||||| |||||||||| ||||| | |||| | | ||| | |||| ||| Sbjct 5149 ATAGTTAATTGCGATTACTTTAAGGCCCTTCTTGAGGATTCGAATCATATCATGGCTGAG 5208 Query 1482 AAGAAGAA 1489 |||||||| Sbjct 5209 AAGAAGAA 5216 >seq9292 Length=77745 Score = 80.6 bits (88), Expect = 3e-12 Identities = 154/225 (68%), Gaps = 19/225 (8%) Strand=Plus/Plus Query 1332 GCCGCTCATTCAATGAATAGTAGATCTAATTTCTGGTTACAAGACTT-ACAGGGAAAGGA 1390 |||| |||||| |||||| | | ||| | |||||| | || || || | |||||| | Sbjct 15823 GCCGGTCATTCTATGAATTCTCGTTCTCAATTCTGGCTTCAGGATTTCATCGGGAAAA-A 15881 Query 1391 TATCTATGTTTTCGAGGAATTCTCTATGGATGTATTTAATGCTAATTACTTTAAAGCCCT 1450 ||| || |||||||| || |||||||||||| | | |||||||||||||| Sbjct 15882 TAT--------TCAAGGAATTCGCTTGTGATGTATTTAATTGTGACTACTTTAAAGCCCT 15933 Query 1451 ATTGGAGGGTAGTATGCATGTAATGGTTGA-----AAAGAAGAATATGCCTAGTGTACAT 1505 | | ||| || | | ||||| || |||| ||| | |||| || | |||| Sbjct 15934 ACTCGAGAGTTCTCTCCATGTTATTTTTGAGAGAGAAAAATCAATAGGCACA----ACAT 15989 Query 1506 TTGGAGAGAAGACCTGTCATCACTACTGGCAATGAGTTCCCATGG 1550 || | ||||| ||||||||||||||||| | | ||| ||| Sbjct 15990 TTACCTCGTAGACCCGTCATCACTACTGGCAACAACTACCCTTGG 16034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6005584278324