Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4321 172 4e-38 seq2828 122 7e-23 >seq4321 Length=90450 Score = 172 bits (190), Expect = 4e-38 Identities = 421/635 (66%), Gaps = 6/635 (1%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||| || ||||| | | || || | ||||| |||||||| || ||||||| || Sbjct 81339 ACAAATTTTGGAAGAGAGATCGAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTA 81398 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || || |||||||| ||||||| ||| ||||| || || || |||| ||| ||||| Sbjct 81399 TATTCTACAATTTCTGTGCACAAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTT 81458 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||| |||||| || |||||||| | ||| || ||||| ||||| || | ||| || Sbjct 81459 GACTTGGCATTGCAGGCGTCCTTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAA 81518 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT---ACGTACCGCCCTACCTTTG 66229 || | ||| | | ||| | | | || || | ||| | | || || ||||| Sbjct 81519 TCGAGGATTTCTTTCCACAAAATTCTAGCTTTAATCGTTTTATTTCCCATCC--CCTTTT 81576 Query 66230 CGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289 | ||| || ||| ||||| | || || ||| ||||| ||| || | | | Sbjct 81577 C-TTCATATAATTCATAGAGTTTGTCAAACTTTTCTCCCCAGCATTCATGAAGTCCAGCA 81635 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 || || || || ||||| | ||||| ||||| || || || ||| |||| | Sbjct 81636 CATTTATGAGGGTCCATCAATGTCCAATTCCCATCACTTTGAACTCGTTTCATGAATAAA 81695 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 || || ||||| | ||| | || | ||| | ||| || | ||| ||||| ||| Sbjct 81696 TCTGGAATCCACAAAGCGCAAAATAAATCTCTAGCTTTTTTCGATTCATCTCCGTGGTTT 81755 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 || ||||| || | || || || ||||| | ||||||||| || | || |||||||| Sbjct 81756 TTACGCAATTCCAAAAATTCCAATATGTCAGAATGCCATGGCTCAATATAAATGGCGAAT 81815 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 | || || || ||||||||||||||||| ||||| ||| || || || | Sbjct 81816 GCACCGGGTCGCTTATTTCCACCTTGGTCGACGTAACGAGCTGCATAATTAAATACCTGG 81875 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589 | ||| || | || || ||| ||||| || || | ||| || ||||| || Sbjct 81876 AGCATTGGAGTTAATCCATTCGATACACCATTTGTTCCATTGATTGGTGATCCAGTCGCT 81935 Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 | ||| |||||||| | ||| |||||||| || Sbjct 81936 CTAATACAATGAACATTTAAACCGATACCACCAGC 81970 Score = 86.0 bits (94), Expect = 5e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 65730 CAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACG 65789 |||||||||| ||||| ||||| || ||| | || |||||||| || || | | Sbjct 79921 CAAAATAAATAGTCTCAAAAATTCGCTTATTCAATTTTGCAGCCTCATCACTTTCAAATG 79980 Query 65790 GCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGA 65848 | ||| | || || ||||| ||||||||||||||||||||||| || || || | Sbjct 79981 G-ATAGCGCAACAATGCAAAAACATCGGCCAGACCTTGAACTCCAATCCCAATTGGCCTG 80039 Query 65849 TGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAAT 65904 || | |||||||| ||| || || |||| || || | ||| ||||| ||||| Sbjct 80040 TGTCTTAAATTGGATGTTCTAGCTTCCGGTAATGGATAATGATTTATATCAATAAT 80095 >seq2828 Length=37213 Score = 122 bits (134), Expect = 7e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 ||||| |||||||||| || ||||| ||||| || ||| | || |||||||| || | Sbjct 28588 ATCGAGAAGGAATTTCTCACCGACGCATTGCCGGTTTCATTGATTGGCATGAACGCTGAA 28529 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGG-TATGAA 61835 |||| |||||||||||||||| |||||||| ||| |||| || ||||| | || | Sbjct 28528 TCGATGTGTGAGTATATTGAATTTGTGGCCGACCGGCTGCTGGTTGAATTGGGCTGTG-A 28470 Query 61836 GCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895 | ||| || || | ||||| || ||||||||||| | |||| | ||||| || Sbjct 28469 CAAGTTCTGGAACACAGAGAACCCGTTGGATTTCATGGATAATATTTGCATCGATGGGAA 28410 Query 61896 GACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 || || || || |||||||| || || || ||| Sbjct 28409 AACTAACTTCTTTGAGAAACGAGTCGGTGAATAT 28376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 178/261 (68%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||| || ||||||||||| || || || || || ||||| | ||||| || Sbjct 28956 ATTATTTAATGCCATCGAAACTATGCCATGCGTTCAGAAAAAAGCTCAATGGGCATTGCG 28897 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTG--GCATTTGCGGTGGTC 61512 |||||| | | || || | || ||||| ||| | | || |||||||| | ||| Sbjct 28896 TTGGATTAGCGATAAAAAATCCACTTTTGG--AACTAGAGTTGTTGCATTTGCTGCTGTC 28839 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| ||||||||||||| ||||| | || |||||| | || || |||||| | Sbjct 28838 GAGGGAATATTTTTCAGTGGTAGTTTTGCATCGATATTTTGGCTTAAAAAGCGTGGATTA 28779 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 |||||||| | |||||||| || || || || || || || | ||||| ||| Sbjct 28778 ATGCCCGGATTATGTTTCAGCAACGAATTAATTAGCCGAGATGAAGGACTTCATTGCGAT 28719 Query 61633 TTTGCTGTTTTGCTATTCAAA 61653 |||||| |||| | || ||| Sbjct 28718 TTTGCTTGTTTGATGTTTAAA 28698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397506066608480