Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq24304 105 1e-20 seq11251 87.8 3e-15 >seq24304 Length=8687 Score = 105 bits (116), Expect = 1e-20 Identities = 178/252 (71%), Gaps = 7/252 (3%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAG 127 || ||||||||||| ||||| || || |||| ||| || || | ||| | || | Sbjct 938 ACGTTTACTTTGAACAAATTTGAATGCTCAAGCCAGCCCGATGTTGTCTGAAAAGTTTTG 997 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAA 186 |||| |||||| ||||||||| | ||||||||||| ||| |||| | ||| ||| |||| Sbjct 998 CATGAAATAATGGAATAGGACTT-CGGTTCTATTTCGTTAGTTT-TCGGATCCGAAGTAA 1055 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||| || || ||||| || | || || | | ||||||||||||| |||| Sbjct 1056 TGATCAAAAGAGATAGGGGGAGACGTTTGTCTGGTTGCGCTAGAGGTGAAATTCATGGAC 1115 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 |||| | ||| |||||||| ||| |||| |||| |||||| || ||| | Sbjct 1116 CGTAACCAGACAAGCTAAAGCGAAAGCATTCGTCAAGCATGTATTCATTGGCCA-TGAGC 1174 Query 307 GAAAGTTAGGGG 318 |||||| || || Sbjct 1175 GAAAGTCAGAGG 1186 >seq11251 Length=11880 Score = 87.8 bits (96), Expect = 3e-15 Identities = 106/140 (76%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCT---CGAATACATTAG 127 || ||||||||||| ||||| || || ||||| || ||| |||| ||| | || | Sbjct 2847 ACGTTTACTTTGAACAAATTTGAATGCTCAAACCACGCCGATGCTGCCTGAAAAGTTTTG 2906 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAA 186 ||||||||||| |||||||| | ||||||||||| | |||||| | | | ||| |||| Sbjct 2907 CATGGAATAATGAAATAGGAC-TTCGGTTCTATTTCGCTGGTTT-TCGAATCCGAAGTAA 2964 Query 187 TGATTAATAGGGATAGTCGG 206 |||| || | ||||| ||| Sbjct 2965 TGATCAAAATAGATAGGCGG 2984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910785111808