Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq178104 132 8e-29 seq24304 127 3e-27 seq30110 100 5e-19 seq56983 95.1 2e-17 seq52446 95.1 2e-17 seq1261 91.5 2e-16 seq11251 89.7 8e-16 seq194346 84.2 3e-14 seq438236 77.0 5e-12 seq268240 77.0 5e-12 seq233778 75.2 2e-11 >seq178104 Length=2051 Score = 132 bits (146), Expect = 8e-29 Identities = 97/113 (86%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 ||||||||||| |||||||||| | | |||||||||||| ||| || ||||||| || | Sbjct 537 TTAGCAGGTTAGAGTCTCGTTCGCTTTAGGAATTAACCAGTCAACTCGCTCCACCGACGA 478 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||| ||| | ||||||||||||| |||||||||| Sbjct 477 AGAACGGCCATGCACCACCAACCACTAACTCAAGAAAGAGCTCTCAATCTGTC 425 Score = 93.3 bits (102), Expect = 7e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 ||| |||| |||||||| |||||| ||||||||||| |||||||||| || ||| || Sbjct 1366 GAACTAACTTGACAAATCGCTCCACTAACTAAGAACGACCATGCACCATCAACCACCAAA 1307 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||||||||| |||||||| Sbjct 1306 TCATGAAAGAGCTATTAATCTGTC 1283 >seq24304 Length=8687 Score = 127 bits (140), Expect = 3e-27 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||| || |||||||||| | | |||||||||||| ||| || ||||||| | | Sbjct 770 TTAGCAGGCTAGAGTCTCGTTCGCTTTAGGAATTAACCAGTCAACTCGCTCCACCGAGGA 711 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 710 AGAACGGCCATGCACCACCAACCTCCAAATCAAGAAAGAGCTATCAATCTGTC 658 Score = 93.3 bits (102), Expect = 7e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 ||| |||| ||||||||| | |||| ||||||||||| |||||||||| || ||| || Sbjct 1478 GAACTAACTAGACAAATCGCACCACTAACTAAGAACGACCATGCACCATCAACCACCAAA 1419 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||||||||| |||||||| Sbjct 1418 TCATGAAAGAGCTATTAATCTGTC 1395 >seq30110 Length=7852 Score = 100 bits (110), Expect = 5e-19 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 3727 CTCCACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTATCAAT 3668 Query 254 CTGTC 258 ||||| Sbjct 3667 CTGTC 3663 >seq56983 Length=5522 Score = 95.1 bits (104), Expect = 2e-17 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 |||||| |||||||| || |||||||||| |||||||||||||||| ||||| ||||||| Sbjct 1403 GGTCTCATTCGTTATTGGGATTAACCAGATAAATCACTCCACCAACCAAGAAGGGCCATG 1344 Query 218 CACCACCACCCA 229 ||||| || ||| Sbjct 1343 CACCAGCAGCCA 1332 >seq52446 Length=5809 Score = 95.1 bits (104), Expect = 2e-17 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 |||||| |||||||||||||||||||||| |||||||||||||||| ||||| | || || Sbjct 715 GGTCTCATTCGTTATCGGAATTAACCAGAAAAATCACTCCACCAACCAAGAAGGACCCTG 774 Query 218 CACCACCACCCA 229 ||||| || ||| Sbjct 775 CACCAGCAGCCA 786 >seq1261 Length=22486 Score = 91.5 bits (100), Expect = 2e-16 Identities = 55/57 (96%), Gaps = 1/57 (2%) Strand=Plus/Plus Query 161 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 17065 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA-TTAGAACGGCCATG 17120 >seq11251 Length=11880 Score = 89.7 bits (98), Expect = 8e-16 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 ||||| ||||| ||||| |||| | | |||||||||||| ||| || ||||||| || | Sbjct 2679 TTAGCGGGTTAGAGTCTCATTCGCTTTAGGAATTAACCAGTCAACTCGCTCCACCGACGA 2620 Query 206 AGAACGGCCATGCACCACCACCCA 229 ||||||||||||||||| || ||| Sbjct 2619 AGAACGGCCATGCACCATCAACCA 2596 Score = 77.0 bits (84), Expect = 5e-12 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 ||| |||| || |||||| |||||| ||| |||||||||||||||| | || ||| || Sbjct 3496 GAACTAACTAGGCAAATCGCTCCACTAACCAAGAACGGCCATGCACTATCAACCAGCAAA 3437 Query 235 TCAAGAAAGAGCTAT 249 ||| ||||||||||| Sbjct 3436 TCATGAAAGAGCTAT 3422 >seq194346 Length=1844 Score = 84.2 bits (92), Expect = 3e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| ||| ||||||||||||||| | |||||||||||||||||||| Sbjct 61 ACTCGTTGGCACCGTCATTGTGGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 2 Query 62 C 62 | Sbjct 1 C 1 >seq438236 Length=590 Score = 77.0 bits (84), Expect = 5e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 |||||| ||||||||||| |||||||||| |||||||||| || | |||| |||||| Sbjct 257 GGTCTCATTCGTTATCGGGATTAACCAGATCAATCACTCCATCAGCCAAGACGTGCCATG 316 Query 218 CACCACCACCCA 229 ||||| || ||| Sbjct 317 CACCAGCAGCCA 328 >seq268240 Length=1195 Score = 77.0 bits (84), Expect = 5e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 |||||| ||||||||||| |||||||||| |||||||||| || | |||| |||||| Sbjct 659 GGTCTCATTCGTTATCGGGATTAACCAGATCAATCACTCCATCAGCCAAGACGTGCCATG 718 Query 218 CACCACCACCCA 229 ||||| || ||| Sbjct 719 CACCAGCAGCCA 730 >seq233778 Length=1447 Score = 75.2 bits (82), Expect = 2e-11 Identities = 60/71 (85%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 |||||| ||||||||||| ||||||||| | || || ||||||||||||| |||| ||| Sbjct 367 CGTTCGCTATCGGAATTAGCCAGACAAACCGCTTCAAAAACTAAGAACGGCTATGCGCCA 426 Query 223 CC-ACCCATAG 232 || ||||| || Sbjct 427 CCAACCCACAG 437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793076385276