Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq353826 188 1e-45 seq58355 187 4e-45 seq188482 107 3e-21 seq22570 84.2 4e-14 seq12739 75.2 2e-11 >seq353826 Length=794 Score = 188 bits (208), Expect = 1e-45 Identities = 187/244 (77%), Gaps = 15/244 (6%) Strand=Plus/Plus Query 48 CTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATC 107 ||||||||||||| |||||||||||||| |||| |||||||||||||| | |||||| | Sbjct 419 CTAACCTGTCTCACAACGGTCTAAACCCAACTCATGTTCCCTATTAGTGCGCGAACAACC 478 Query 108 CAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 ||| || |||||||| ||| |||||| |||||||||| || ||||||||| ||| Sbjct 479 CAATAATTGGTGAATTCTGTTTCATAATGATAAGAAGAGCCGAAATTGAAGGATCAGAAA 538 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 || ||||||||| |||||||| | | || |||||| |||||||||||| || |||||| Sbjct 539 GCGACGTCGCTACGAACGCTTAACCGGCATAAGCCAATTATCCCTGTGGCAAACTTTCTG 598 Query 228 GCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTT 287 |||| || | || | |||||||| ||| |||| |||||| ||| | Sbjct 599 ACACCCCTTG------AT---------CAAAAGGATCATTAGACCACGCTTTCACGGTCT 643 Query 288 GTAT 291 |||| Sbjct 644 GTAT 647 >seq58355 Length=5437 Score = 187 bits (206), Expect = 4e-45 Identities = 154/188 (82%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 48 CTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATC 107 || |||||||||| |||||||||||||| |||| |||||||||||||| | |||||| | Sbjct 4832 CTTACCTGTCTCACAACGGTCTAAACCCAACTCATGTTCCCTATTAGTGCGGGAACAACC 4773 Query 108 CAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 ||| || |||||||| ||| |||||| || || ||||||||||||||||| ||| Sbjct 4772 CAATAATTGGTGAATTCTGTTTCACAATGATAAGAGGAACCGACATCGAAGGATCAGAAA 4713 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 || ||||||||| |||||||| | | || |||||| |||||||||||| || ||||||| Sbjct 4712 GCGACGTCGCTACGAACGCTTAACCGGCATAAGCCAATTATCCCTGTGGCAAATTTTCTG 4653 Query 228 GCACCTCT 235 |||| || Sbjct 4652 ACACCCCT 4645 >seq188482 Length=1916 Score = 107 bits (118), Expect = 3e-21 Identities = 112/147 (76%), Gaps = 9/147 (6%) Strand=Plus/Plus Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||||||| |||||| ||||||||| |||||||||| |||||||| |||| ||| ||| Sbjct 1135 AAGGATCCAAAAGCGACGTCGCTACGAACGCTTGGTCGCCACAAGTTAGTTCTCCGCGTG 1194 Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAA--------ATTTCGAGGGA-CTAAAGGATCGA 266 |||||||||||| | ||||| || |||| || ||| || | ||||||| | Sbjct 1195 GTAACTTTTCTGACGCCTCTCGCTTCAAAACTCAGGATATCGGTTGATCAAAAGGATAGC 1254 Query 267 TAGGCCACACTTTCATGGTTTGTATTC 293 | |||||| |||||| ||| |||| || Sbjct 1255 TTGGCCACGCTTTCAAGGTCTGTAATC 1281 >seq22570 Length=8990 Score = 84.2 bits (92), Expect = 4e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||| ||||||||||||||| ||||| |||||||||| |||||| || |||||| || Sbjct 440 CATCAGTGGGGTAAAACTAACCTTTCTCACGACGGTCTAAGCCCAGCCCATGTTCCCCAT 381 Query 92 TAGTGG 97 | |||| Sbjct 380 TTGTGG 375 >seq12739 Length=11353 Score = 75.2 bits (82), Expect = 2e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||| ||||||||||||||| ||||| ||||| ||| |||||| || |||||| || Sbjct 453 CATCAGTGGGGTAAAACTAACCTTTCTCACGACGGGCTAGGCCCAGCCCATGTTCCCCAT 394 Query 92 TAGTGG 97 | |||| Sbjct 393 TTGTGG 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 850278408576