Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq273799 80.6 4e-13 seq58355 73.4 6e-11 >seq273799 Length=1162 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 3 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGAGCGGCCAAT 60 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||| |||| |||||| | ||||||||||||||||| ||||| Sbjct 61 GGTGCGAAGCTACCGTCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATC 113 >seq58355 Length=5437 Score = 73.4 bits (80), Expect = 6e-11 Identities = 91/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||| |||| || | | ||||| | ||||| || | ||| || | | || | Sbjct 5306 GTACGAGATGAACTGCAGG-TCCAGAA-ATTTGGTAAATGTGCCTGGTCGAGCGGCCAAT 5363 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| ||||| | ||||||||||||||||| |||||| ||| Sbjct 5364 GGTGCGAAGCTACCATCTGAGGGATTGAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 5423 Query 121 GA 122 || Sbjct 5424 GA 5425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 815371705344