Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq428805 205 3e-50 seq427882 201 3e-49 >seq428805 Length=612 Score = 205 bits (226), Expect = 3e-50 Identities = 165/200 (83%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 48 ATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGA 107 || ||||| |||||| ||| ||||||||| |||||||||||||||||| | ||||||| Sbjct 564 ATCGTCACCACCTCCACGTACTGGGATTGGGCAATTTGCGCGCCTGCTGCGTCCCTTGGA 505 Query 108 TGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 ||||||||||||||||| |||||||||||||||||||||||| |||||| |||| | Sbjct 504 AGTGGTAGCCGTTTCTCAAGCTCCCTCTCCGGAATCGAACCCTGATTCCCAGTTATC--- 448 Query 168 TGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 | ||| |||||| | ||||||||||||||||||||||||||| | ||||| || Sbjct 447 ----ATCATAGTAGGCAGGTCACCTACCATCGAAAGTTGATAGGGCAGACAGTTGAAGGA 392 Query 228 ACCATCGCCGGCTCAAGGCC 247 || |||||| | ||||||| Sbjct 391 CCCGTCGCCGACGCAAGGCC 372 >seq427882 Length=614 Score = 201 bits (222), Expect = 3e-49 Identities = 164/200 (82%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 48 ATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGA 107 || ||||| |||||| ||| |||| |||| |||||||||||||||||| | ||||||| Sbjct 566 ATCGTCACCACCTCCACGTACTGGGAGTGGGCAATTTGCGCGCCTGCTGCGTCCCTTGGA 507 Query 108 TGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 |||| |||||||||||| |||||||||||||||||||||||| |||||| |||| | Sbjct 506 AGTGGCAGCCGTTTCTCAAGCTCCCTCTCCGGAATCGAACCCTGATTCCCAGTTATC--- 450 Query 168 TGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 | |||||||||| | ||||||||||||||||||||||||||| | ||||| || Sbjct 449 ----ATCATGGTAGGCAGGTCACCTACCATCGAAAGTTGATAGGGCAGACAGTTGAAGGA 394 Query 228 ACCATCGCCGGCTCAAGGCC 247 || |||||| | ||||||| Sbjct 393 CCCGTCGCCGACGCAAGGCC 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503113890816