Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq257780 158 1e-33 seq219432 123 2e-23 >seq257780 Length=1265 Score = 158 bits (174), Expect = 1e-33 Identities = 412/633 (65%), Gaps = 34/633 (5%) Strand=Plus/Plus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || || |||||||| ||||| || ||||| ||||| | ||||||||||| || Sbjct 7 GCATTTTTTGCCGCAAGCGACGGGATAGTCAACGAGAACCTTGTGGAACGTTTCAGTCAA 66 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || || ||||| |||| || ||||| ||||| || ||||| ||||| || || ||| | Sbjct 67 GAAGTACAAGTCCCGGAAGCTCGTTGCTTCTATGGATTCCAAATTGCAATCGAAAATATT 126 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACG---- 61388 |||||||||||||| | | |||||||| |||||||||| ||| | ||||| Sbjct 127 CACTCGGAGATGTATTCTCTCCTCATCGACACGTACATCAAGGATCCTATCGAACGGTAC 186 Query 61389 -----------------------TGAACGATTGT----TCAATGCCATCGAGACGATACC 61421 | | ||| | | | || || | | || | || Sbjct 187 TTCCTCTAACTCTTATTTTATTTTTAGCGACTTTCTCTTTAACGCAGTACAAACCCTTCC 246 Query 61422 GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATT 61481 ||||| ||| || || ||||| |||| ||||| ||| | || || Sbjct 247 CTGTGTGAAAAAGAAGGCTGACTGGGCACTCAAGTGGATTGGTGACTCAAAATCCACGTT 306 Query 61482 TGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGC 61541 | || || || | || ||||| | || ||||| || || || ||| |||||||| Sbjct 307 TCCAGAGCGCCTGGTAGCCTTTGCAGCCGTAGAGGGGGTTTTCTTTTCTGGGTCGTTTGC 366 Query 61542 CGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTT 61601 | ||||| ||| ||||||| ||||| |||||||| || |||| ||||||||||| | Sbjct 367 GTCCATCTTCTGGCTGAAGAAGCGTGGGCTTATGCCAGGGTTGACATTCAGCAATGAACT 426 Query 61602 GATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCT 61661 ||| || || ||||| | || ||| || ||| | | || ||| || | ||| Sbjct 427 AATAAGCCGTGATGAGGGACTTCACACTGACTTCGCTTGTCTTCTGTTCCGACAC-ATCA 485 Query 61662 GGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGA 61721 | || || || ||||||| || | | |||| | || || || || |||||| Sbjct 486 G--AAACAAACCCTCTAAGGAGCGCGTAGAAGCGATTATGCGGGAAGCTGTTGATATCGA 543 Query 61722 ACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAAT 61781 | ||||||||||||||||||| | || || | ||||||||||| || | || || Sbjct 544 AGTGGAATTTCTGACTGACGCTCTTCCTGTGGACTTGATCGGCATGAACTGCCGTCTGAT 603 Query 61782 GTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 | | ||||| || | ||||||||| ||||| Sbjct 604 GGCCCAGTACATCCGTTATGTTGCCGATCGTCT 636 >seq219432 Length=1578 Score = 123 bits (136), Expect = 2e-23 Identities = 221/318 (69%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 66253 TTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGA 66312 |||||| ||||||||| ||| | |||| |||||||| || ||| ||| || | Sbjct 694 TTCGAATTCTTCACCCCAACAGTCGAATAGACCTGGACACTCATGAGGATCCATTAGAGT 635 Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 ||| | | | || || || ||||||||||| ||||| |||||||| |||| ||| Sbjct 634 CCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGGTCAGGAATCCAGAGAGCGTGGAA 575 Query 66373 GAGATCGCGTGCTC--GTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTC 66429 |||||| || | || ||| || ||| ||| ||| |||||||||| || | |||| Sbjct 574 GAGATCACGAGTTCTAGTTTCT--TCAGCGCCAGTG-TTTTTGCGCAGCTCTACAAACTG 518 Query 66430 AAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCC 66489 | ||||| | ||||||||||| ||||| || ||||| | ||| |||||| || Sbjct 517 CAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAGGCGCCTGGCCGTTTGTTTCC 458 Query 66490 ACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTT 66549 || || || || || || ||| |||||| | || || | ||| || || | ||||| Sbjct 457 GCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGGAGCATTGGAACCAAACCGTT 398 Query 66550 AGATTTGCCATTGGTGCC 66567 || | ||||| || || Sbjct 397 GGACTCTCCATTTGTACC 380 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 ||||| || || ||||| || ||||| || || | | | || ||||| || || |||||| Sbjct 1012 GATGCAAGATTACAGACGGCAATCTCATCGGGTGAGCTGTATTCGACGATCTCCGTGCAC 953 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||| || || |||| | || ||||| |||||||||||| | ||| Sbjct 952 AGGTTTGAGCATTTAATTGTTCCCAGGTGTTGATGATTTGACTTGCGATTGCAGGAGTCC 893 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGC 66183 ||||||| |||| | || |||| ||||| | ||| | ||||| ||||| Sbjct 892 TTGTACAGCATGAATGGGTTGCCAGTCTCGATTTGCGCTTCAATAATGGC 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395230617717440