Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq257780 158 1e-33
seq219432 123 2e-23
>seq257780
Length=1265
Score = 158 bits (174), Expect = 1e-33
Identities = 412/633 (65%), Gaps = 34/633 (5%)
Strand=Plus/Plus
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272
|| || |||||||| ||||| || ||||| ||||| | ||||||||||| ||
Sbjct 7 GCATTTTTTGCCGCAAGCGACGGGATAGTCAACGAGAACCTTGTGGAACGTTTCAGTCAA 66
Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332
|| || ||||| |||| || ||||| ||||| || ||||| ||||| || || ||| |
Sbjct 67 GAAGTACAAGTCCCGGAAGCTCGTTGCTTCTATGGATTCCAAATTGCAATCGAAAATATT 126
Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACG---- 61388
|||||||||||||| | | |||||||| |||||||||| ||| | |||||
Sbjct 127 CACTCGGAGATGTATTCTCTCCTCATCGACACGTACATCAAGGATCCTATCGAACGGTAC 186
Query 61389 -----------------------TGAACGATTGT----TCAATGCCATCGAGACGATACC 61421
| | ||| | | | || || | | || | ||
Sbjct 187 TTCCTCTAACTCTTATTTTATTTTTAGCGACTTTCTCTTTAACGCAGTACAAACCCTTCC 246
Query 61422 GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATT 61481
||||| ||| || || ||||| |||| ||||| ||| | || ||
Sbjct 247 CTGTGTGAAAAAGAAGGCTGACTGGGCACTCAAGTGGATTGGTGACTCAAAATCCACGTT 306
Query 61482 TGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGC 61541
| || || || | || ||||| | || ||||| || || || ||| ||||||||
Sbjct 307 TCCAGAGCGCCTGGTAGCCTTTGCAGCCGTAGAGGGGGTTTTCTTTTCTGGGTCGTTTGC 366
Query 61542 CGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTT 61601
| ||||| ||| ||||||| ||||| |||||||| || |||| ||||||||||| |
Sbjct 367 GTCCATCTTCTGGCTGAAGAAGCGTGGGCTTATGCCAGGGTTGACATTCAGCAATGAACT 426
Query 61602 GATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCT 61661
||| || || ||||| | || ||| || ||| | | || ||| || | |||
Sbjct 427 AATAAGCCGTGATGAGGGACTTCACACTGACTTCGCTTGTCTTCTGTTCCGACAC-ATCA 485
Query 61662 GGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGA 61721
| || || || ||||||| || | | |||| | || || || || ||||||
Sbjct 486 G--AAACAAACCCTCTAAGGAGCGCGTAGAAGCGATTATGCGGGAAGCTGTTGATATCGA 543
Query 61722 ACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAAT 61781
| ||||||||||||||||||| | || || | ||||||||||| || | || ||
Sbjct 544 AGTGGAATTTCTGACTGACGCTCTTCCTGTGGACTTGATCGGCATGAACTGCCGTCTGAT 603
Query 61782 GTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814
| | ||||| || | ||||||||| |||||
Sbjct 604 GGCCCAGTACATCCGTTATGTTGCCGATCGTCT 636
>seq219432
Length=1578
Score = 123 bits (136), Expect = 2e-23
Identities = 221/318 (69%), Gaps = 6/318 (2%)
Strand=Plus/Minus
Query 66253 TTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGA 66312
|||||| ||||||||| ||| | |||| |||||||| || ||| ||| || |
Sbjct 694 TTCGAATTCTTCACCCCAACAGTCGAATAGACCTGGACACTCATGAGGATCCATTAGAGT 635
Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372
||| | | | || || || ||||||||||| ||||| |||||||| |||| |||
Sbjct 634 CCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGGTCAGGAATCCAGAGAGCGTGGAA 575
Query 66373 GAGATCGCGTGCTC--GTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTC 66429
|||||| || | || ||| || ||| ||| ||| |||||||||| || | ||||
Sbjct 574 GAGATCACGAGTTCTAGTTTCT--TCAGCGCCAGTG-TTTTTGCGCAGCTCTACAAACTG 518
Query 66430 AAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCC 66489
| ||||| | ||||||||||| ||||| || ||||| | ||| |||||| ||
Sbjct 517 CAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAGGCGCCTGGCCGTTTGTTTCC 458
Query 66490 ACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTT 66549
|| || || || || || ||| |||||| | || || | ||| || || | |||||
Sbjct 457 GCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGGAGCATTGGAACCAAACCGTT 398
Query 66550 AGATTTGCCATTGGTGCC 66567
|| | ||||| || ||
Sbjct 397 GGACTCTCCATTTGTACC 380
Score = 91.5 bits (100), Expect = 1e-13
Identities = 122/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073
||||| || || ||||| || ||||| || || | | | || ||||| || || ||||||
Sbjct 1012 GATGCAAGATTACAGACGGCAATCTCATCGGGTGAGCTGTATTCGACGATCTCCGTGCAC 953
Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133
|| || ||| || || |||| | || ||||| |||||||||||| | |||
Sbjct 952 AGGTTTGAGCATTTAATTGTTCCCAGGTGTTGATGATTTGACTTGCGATTGCAGGAGTCC 893
Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGC 66183
||||||| |||| | || |||| ||||| | ||| | ||||| |||||
Sbjct 892 TTGTACAGCATGAATGGGTTGCCAGTCTCGATTTGCGCTTCAATAATGGC 843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395230617717440
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