Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq283 156 6e-36 seq17 86.0 9e-15 >seq283 Length=89750 Score = 156 bits (172), Expect = 6e-36 Identities = 169/219 (77%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||||||||||| | Sbjct 59272 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAATT-C 59329 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | ||||||| ||| | ||||| |||||| | || | || || Sbjct 59330 CTCGTTCACGGGGAACAATTCCAAGCCCCGATCCCTGTCACGACGGTGATTGACCAGTTT 59389 Query 120 ACCCGGACCTGTCGGCCAAGGTGATA-GACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | || | |||||| ||| | ||| |||||||||||||| Sbjct 59390 GCCCAACCCTTTCGGGCCAGAAGGCCTGACTCGCTGACACCGTCATTGTAGCGCGCGTGC 59449 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||| | ||||||||||||||||||||||||||||||| Sbjct 59450 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 59488 >seq17 Length=1101097 Score = 86.0 bits (94), Expect = 9e-15 Identities = 139/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| ||||||| ||| | ||| |||||| || | ||||||| | ||| Sbjct 1088833 GTACAAAGGGCAGGGATGTAGTCAGCGCAAACTT-ATGACTTGCACCTACTAGGGAATTC 1088775 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT-GAAATTTCAAAGATT 119 |||||| | | || |||| ||| || ||||| ||||||| | ||| || || Sbjct 1088774 CTCGTTCACGGAGAAGAATTCCAAGCTTCGATCCCTGTCACGATGGTGATTGACCAGTTT 1088715 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| | || | || | | ||||||| || | || ||||| |||||||| Sbjct 1088714 GCCCAACCCTTTTGGGCCAGAAGGTCTGACTCGTATAAACCGTCGTTGTAGTGCGCGTGC 1088655 Query 179 GGCCCAGAACATCTAA 194 | || | ||||| || Sbjct 1088654 GACCGCGGACATCCAA 1088639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751949733500