Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq283 158 5e-36 seq10 122 4e-25 seq17 102 3e-19 seq5186 91.5 6e-16 seq659 86.0 3e-14 seq627 86.0 3e-14 >seq283 Length=89750 Score = 158 bits (174), Expect = 5e-36 Identities = 107/120 (89%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||||| |||||||||||||||||||||||| || |||| |||||||||||||||||||| Sbjct 56227 TGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAGGAAACTCTG 56168 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||| ||||| |||||||||||||||||||| || |||||||||||| Sbjct 56167 GTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACGTGAGTATAGGGGCGA 56108 >seq10 Length=1813975 Score = 122 bits (134), Expect = 4e-25 Identities = 105/129 (81%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | || || |||| ||||||||||||||||||| || |||| ||||| Sbjct 598425 GAGCATGAGCACACATGATGAGACCTGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 598366 Query 609 CCAGAGGAAAC-TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||||||||| | ||||||||| || |||| ||||| | |||||||| ||||||||| Sbjct 598365 CCAGAGGAAACTTGTGGTGGAGGACCGTAGCGATTCTGACATGCAAATCCATCGTCAAAC 598306 Query 668 TTGGGTATA 676 || ||||| Sbjct 598305 GTGAGTATA 598297 >seq17 Length=1101097 Score = 102 bits (112), Expect = 3e-19 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | || |||| |||| ||||||||||||| |||||||||| || ||| ||||| Sbjct 1091248 GAGCATGAACATACTTGTTAAGACCCGAAAGATGATGAACTATGCTTGCGCAGGTTGAAG 1091307 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||| | ||| || || | | ||||| | ||||||||||| |||||| Sbjct 1091308 CCAGAGGAAACTTTAATGGCGGACCGTGGAGATTCTGACATGCAAATCGATTGTCAAACG 1091367 Query 669 TGGGTATAGGG 679 || | |||||| Sbjct 1091368 TGAGCATAGGG 1091378 >seq5186 Length=1060 Score = 91.5 bits (100), Expect = 6e-16 Identities = 103/137 (75%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 46 AGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGC 105 || |||||| || |||||| | ||||||| |||||| | || || |||||||| ||| Sbjct 45 AGCTGTTTGAGATTGCAGCCCAAAATGGGTGGTAAACTCTCTCCAAGGCTAAATACGGGC 104 Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 ||| | ||||||| |||||| |||| |||| ||||||||||| || | |||||| Sbjct 105 ACGAGTCTGATAGCGAACAAGTTTCGTGAGTTAAAGTTGAAAAGCACTCTGAAGAGAGAG 164 Query 166 TTAAAAAGCACGTGAAA 182 | || || || ||||| Sbjct 165 -TGAAGAGTACATGAAA 180 >seq659 Length=37099 Score = 86.0 bits (94), Expect = 3e-14 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 46 AGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGC 105 || |||||| || |||||| | || |||| |||||| | || || ||||||| ||| Sbjct 21993 AGCTGTTTGAGATTGCAGCCCAAAGTGGGTGGTAAACTCTATCCAAGCCTAAATACGGGC 22052 Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 ||| ||||||||| |||||| |||| |||| ||||||||||| || | |||||| Sbjct 22053 ACGAGTCCGATAGCGAACAAGTTTCGTGAGTTAAAGTTGAAAAGCACTCTGAAGAGAGAG 22112 Query 166 TTAAAAAGCACGTGAAA 182 | || || || ||||| Sbjct 22113 -TGAAGAGTACATGAAA 22128 >seq627 Length=38864 Score = 86.0 bits (94), Expect = 3e-14 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 46 AGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGC 105 || |||||| || |||||| | || |||| |||||| | || || |||| ||| ||| Sbjct 31380 AGCTGTTTGAGATTGCAGCCCAAAGTGGGTGGTAAACTCTGTCCAAGGCTAGATACGGGC 31321 Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 ||| ||||||||| |||||| |||| |||| ||||||||||| || | |||||| Sbjct 31320 ACGAGTCCGATAGCGAACAAGTTTCGTGAGTTAAAGTTGAAAAGCACTCTGAAGAGAGAG 31261 Query 166 TTAAAAAGCACGTGAAA 182 | || || || ||||| Sbjct 31260 -TGAAGAGTACATGAAA 31245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079851995000