Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq169 221 2e-55 seq6 217 3e-54 seq17 122 1e-25 >seq169 Length=159598 Score = 221 bits (244), Expect = 2e-55 Identities = 160/185 (86%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 ||||||||||||||||||| ||| |||||| ||||||||||| | ||||||||||||| Sbjct 154334 GTAGGGTAAAACTAACCTGCTTCACGACGGTTCAAACCCAGCTCGCATTCCCTATTAGTG 154393 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||||||||||||||| ||| | || || ||| ||||||||||||||||||||||| Sbjct 154394 GGTGAACAATCCAACACTTGGCAAAATCAACTTTACAATGATAGGAAGAGCCGACATCGA 154453 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 ||||||||||||| ||||||||| |||||||||| |||||||||||||||| ||||| Sbjct 154454 AGGATCAAAAAGCGGCGTCGCTATAAACGCTTGGCCACCACAAGCCAGTTATCTTTGTGG 154513 Query 217 TAACT 221 ||||| Sbjct 154514 TAACT 154518 >seq6 Length=2156997 Score = 217 bits (240), Expect = 3e-54 Identities = 152/173 (88%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||||||| Sbjct 327269 CATCAGTCGGGTAAAACTAACCTGTCTCACAACGGTCTAAACTCGGCTCACGTTCCCTAT 327210 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||| Sbjct 327209 TAGTGGGTGAACAATCCAAAGCTTGGTGAATTCTGCTTTACAGTGAAAGGAAGAGCCGAC 327150 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 ||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct 327149 ATCGAAGGACCATAAAGCAACGTCGCTATGCACGCTTGGTCGCCACAAGACAG 327097 >seq17 Length=1101097 Score = 122 bits (134), Expect = 1e-25 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 |||||||||||||||| | ||||| |||| ||||||||||| | ||||| ||||||| Sbjct 1093874 CCTATTAGTGGGTGAAAATTCCAAAGCTTGGTGAATTCTGCTTTGCAATGATGGGAAGAG 1093815 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 ||||||| |||||||||||| || || ||||| || ||||||| ||| ||||||| Sbjct 1093814 CCGACATTGAAGGATCAAAAGGCGACATCGCTTAAAAAGCTTGGCCGCCGCAAGCCA 1093758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854341046400