Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq283 91.5 9e-17 seq17 71.6 8e-11 >seq283 Length=89750 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 59232 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 59289 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 59290 TAAT-CAGCGCAAGCT 59304 >seq17 Length=1101097 Score = 71.6 bits (78), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGT 92 |||||| | |||| || || || || | ||| ||||||||| ||||||||||| |||| Sbjct 1088887 GCCAATCC--AAAGACCTTACCAAACC-TCTCAGTCGGTAGTA-GCGACGGGCGGTGTGT 1088832 Query 93 ACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||| | || ||||| || Sbjct 1088831 ACAAAGGGCAGGGATGTAGT-CAGCGCAAACT 1088801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300780542000