Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq283 192 1e-46 seq127 73.4 7e-11 >seq283 Length=89750 Score = 192 bits (212), Expect = 1e-46 Identities = 202/259 (78%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| | ||| |||||| ||| | ||| ||||||||||||||||| Sbjct 59528 CTTCTTAGAGGGACAAGCGGGAGAAGCCGCACGAAATA-GAG-CAATAACAGGTCTGTGA 59471 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | ||||||||||||||||||| |||| | | || ||||| || | Sbjct 59470 TGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGACGGTGTCAGCGAGT-CAGGCC 59412 Query 192 CT-TGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 | ||||| ||| || |||| || || || || | | |||||| ||||| | | || Sbjct 59411 TTCTGGCCCGAAAGGGTTGGGCAAACTGGTCAATCACCGTCGTGACAGGGATCGGGGCTT 59352 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | |||| || | | | |||||||||| ||||||||| || ||||| ||| ||| |||| Sbjct 59351 GGAATTGTTCCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTGAT 59292 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 59291 TACGTCCCTGCCCTTTGTA 59273 >seq127 Length=247233 Score = 73.4 bits (80), Expect = 7e-11 Identities = 87/113 (77%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 58 TGGCG-GGTCGCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCA 116 ||||| ||| ||| ||||||||||||| | | | |||||| ||||| ||| || Sbjct 152660 TGGCGCGGTTGCCTACTTCTTAGAGGGATAAGCAGGAGAAGCCGCACGAAGTA-GAG-CA 152603 Query 117 ATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 || |||||||||||||| | |||| | | | ||||||||||||| ||||| || Sbjct 152602 ATGACAGGTCTGTGATGAC-TTAGGTATCCAGGGCCGCACGCGCACTACAATG 152551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947134643200