Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq283 408 1e-111 seq17 401 2e-109 seq303 136 1e-29 >seq283 Length=89750 Score = 408 bits (452), Expect = 1e-111 Identities = 266/296 (90%), Gaps = 21/296 (7%) Strand=Plus/Plus Query 237 CTCCCACTTATT-CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||| ||||||| || ||| ||||||||||||||||||||||||||||| Sbjct 54057 CTCCCACTTATTGCTACACCCGCCATGTCTCTTCACAAAGTCGGACTAGAGTCAAGCTCA 54116 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 54117 ACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 54176 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 54177 GATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 54236 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 | ||||||||||||||||||||||||||||||||||||||| Sbjct 54237 G--------------------AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 54276 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 54277 GTTGAATTTCTCCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 54332 >seq17 Length=1101097 Score = 401 bits (444), Expect = 2e-109 Identities = 310/362 (86%), Gaps = 5/362 (1%) Strand=Plus/Minus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAA 233 |||||||| ||| |||||||| |||| | | || ||||| | ||| | || || Sbjct 1093337 CCGCTTCACTGAATAAGTAAAGAAACATTGATGGGAGTGGCCTGTCATTGACGTCCTCGT 1093278 Query 234 CG-GCTC-CCACTTATT-CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290 || ||| || |||||| ||||||| || ||| |||||||| || ||||||| ||| Sbjct 1093277 CGAGCTTTCCGCTTATTGCTACACCCGCCATGTCTCCTCACAAAGCCGAACTAGAGCCAA 1093218 Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| ||| Sbjct 1093217 GCTCAATAGGGTCTTCTTTCCTCGCTGATTCTACCAAGCCCGTTCCCTTGGCTGTGATTT 1093158 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTAA 409 ||||||||||||||| |||||||| ||| |||||||||| |||||||| || ||||||| Sbjct 1093157 TGCTAGATAGTAGATATGGACAGTGAGAAATCTCGTTAATTCATTCATGTGCATCACTAA 1093098 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 |||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 1093097 TTAGATGATGAGGCATTTGCCTACCTTAAGAGAGTCATAGTTACTCCAACCGTTTACCCG 1093038 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1093037 TACTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 1092978 Query 530 AA 531 || Sbjct 1092977 AA 1092976 >seq303 Length=84630 Score = 136 bits (150), Expect = 1e-29 Identities = 100/115 (87%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||| |||||||| |||||||||||||||||||||||||| ||||| || ||||| Sbjct 68002 ACGAGGG-TTTGGCTATCTTAAGAGAGTCATAGTTACTCCCGCTGTTTAACCAGGCTTGA 68060 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 || ||||||||||||||||| ||| ||||||| |||||||| ||||||| |||| Sbjct 68061 TTAAATTTCTTCACTTTGACTTTCGGAGCACTAAGCAGAAATAACATTGCATCAA 68115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635087171200