Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2123 280 4e-73 seq283 275 2e-71 >seq2123 Length=6381 Score = 280 bits (310), Expect = 4e-73 Identities = 234/282 (83%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACA-AGACCCAAAAG--AGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| ||||| || | | || || || | ||| |||||| | ||||| ||| Sbjct 4074 ACTCATTCCGATTACGGAGCCTCTTGAGGGAGTCCCGCATCGGTATTTTTCGTCACCACC 4133 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 4134 TCCCCGTGCCGGGAATGGGTAATTTGCGCGCCTGCTGCCTCCCTTGGAAGTGGTAGCCGT 4193 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 4194 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTATCACCATGGT 4253 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||| ||||||||||||||| ||||||| || || |||||| | Sbjct 4254 AGGCAGGTCACCTACCATCGACAGTTGATAGGGCAGACATTTGAAGGACCCGTCGCCGAC 4313 Query 240 TCAAGGCC--ATGCGATTCGTTA-AGTTATTATGAATCACCA 278 |||||||| |||||| || | | |||| || |||||| Sbjct 4314 TCAAGGCCGACTGCGATCTGTAACAATTATCCAGAGTCACCA 4355 Score = 179 bits (198), Expect = 1e-42 Identities = 139/162 (86%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||||||||||||||||| ||| || ||||||||| || ||||| ||| ||||||| Sbjct 4526 GCATGTATTAGCTCTAGAGTTATTACAGTTATCCATTTAACG-GGTACGATCCAATAAAC 4584 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACA 462 ||| ||||||||||||||||||||| ||||||| ||| ||| || | ||| ||||| Sbjct 4585 CATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTACTAGG--GCCTGAACTGAGACA 4642 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||| Sbjct 4643 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 4684 >seq283 Length=89750 Score = 275 bits (304), Expect = 2e-71 Identities = 211/248 (85%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACA-AGACCCAAAAG--AGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| ||||| || | | || || || | ||| |||||| | ||||| ||| Sbjct 61099 ACTCATTCCGATTACGGAGCCTCTTGAGGGAGTCCCGCATCGGTATTTTTCGTCACCACC 61158 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 61159 TCCCCGTGCCGGGAATGGGTAATTTGCGCGCCTGCTGCCTCCCTTGGAAGTGGTAGCCGT 61218 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| Sbjct 61219 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCGGTTACCCGTTATCACCATGGT 61278 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | |||||| |||| ||||||||||||||| ||||||| || ||||||||| | Sbjct 61279 AGGCAGGTCACCTACCGTCGACAGTTGATAGGGCAGACATTTGAAGGACCCATCGCCGAC 61338 Query 240 TCAAGGCC 247 |||||||| Sbjct 61339 TCAAGGCC 61346 Score = 114 bits (126), Expect = 4e-23 Identities = 98/119 (82%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGA 445 ||||| ||| | ||||| ||| | | || |||||||||||||| ||||||| ||| ||| Sbjct 61593 GGTACGATCCAGTAAACCATAGCCGGTTCAATGAGCCATTCGCGGTTTCACCGTACTAGG 61652 Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || | ||| |||||||||||||| |||||||||||||| || |||||||||||||| Sbjct 61653 --GCCTGAACTGAGACATGCATGGCTCAATCTTTGAGACAAACACATGACTACTGGCAG 61709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510295782400