Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 120 2e-22 seq282 86.0 5e-12 >seq1 Length=4220646 Score = 120 bits (132), Expect = 2e-22 Identities = 209/299 (70%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| |||||||| || ||||| || ||| ||||||||| || || || ||| ||| Sbjct 1713893 CATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCTTCAGC 1713834 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||| ||| || || || || || | |||| | | || | |||||||||||| || | Sbjct 1713833 GCCAGTG-TTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGAGAT 1713775 Query 66459 AGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGT 66518 ||||||| || | || ||||| ||| || || ||||| || |||||| ||| Sbjct 1713774 AGATGGCAAAGGCACCGGGTCGTTTATTGCCTCCCTGATCGACATAACGAGCGGTGCTGT 1713715 Query 66519 TGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGG 66578 ||||||| || | ||||||||| || || || || | ||||| || || |||| | Sbjct 1713714 TGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCGATAAACG 1713655 Query 66579 ATCCTCGTGC-CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 | || ||| || || ||||||||| ||||| || ||||| || | |||||||| Sbjct 1713654 -TATTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGTTTTTCGAGAT 1713597 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||||||| |||||||| | || || || | ||||||||||| |||| ||| | | Sbjct 1714312 CCACAAATTTGGGAAGAGAAATGGAAGCCAAATTGCAGACAGCAGTCTCTGTAGGCGAGC 1714253 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | ||||||||||| || ||||| || || ||| |||||| || | | || || | Sbjct 1714252 TGTACTCGACAATCTCAGTGCAAAGGTTCGAGCACTTTATGGTTCCTAGGTGTTGATGGT 1714193 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | |||||||||||| | ||| || |||| ||| ||||| |||| || || | || Sbjct 1714192 TGGACTTGCGATTGCAGGAATCTTTATACAGCATAAACGGATTGCCTGTTTCGATCTGAT 1714133 Query 66171 ACTCAATGAT 66180 |||||| || Sbjct 1714132 TCTCAATAAT 1714123 >seq282 Length=89805 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/100 (80%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 9157 TTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATACGGACTATA 9216 ||||||||||||||||||| || | ||||||| ||||||||||| | |||||||| Sbjct 34951 TTTACGGTTTCCAGTGGCGTCACTGCGGTGCTGAATACATCGATTGCAAAACGGACTACT 34892 Query 9217 CGGGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCA 9256 |||| || || || || |||||||| |||| ||||||| Sbjct 34891 CGGGACAGGGGGTTGACCAGTTGGC-CAAT---TGCATCA 34856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534567016000