Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5 206 2e-48 seq8 120 2e-22 seq380 82.4 6e-11 >seq5 Length=4770536 Score = 206 bits (228), Expect = 2e-48 Identities = 515/775 (66%), Gaps = 13/775 (2%) Strand=Plus/Plus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 ||||| || | ||||| || | |||||| | || | ||||||||| | ||||| Sbjct 3306794 AATCCCCGAAGATTCGTTGTGATGCCCATCCAATACCATGATATTTGGGAGTTCTACAAG 3306853 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 || |||| || || |||||||| || ||||| || ||||| | || || | | |||| Sbjct 3306854 AAAGCGGTTGCCTCTTTCTGGACAGTTGAGGAAGTTGATTTAGCGAAGGATCTCACTGAC 3306913 Query 61165 TGGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGC 61223 ||||| || ||| || || || | || |||||| |||| ||||| ||||| || Sbjct 3306914 TGGGAAAGTCTTAATGAT-GGCGAGCGTCACTTCATTTCGTATGTCTTGGCTTTCTTCGC 3306972 Query 61224 CGCTTCGGACGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAGGAGGTGCAA 61281 || || || ||||| ||||| ||| || || ||| ||| | ||||| ||| Sbjct 3306973 GGCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAATTTTTGTAAC--GAGGTCCAA 3307030 Query 61282 GTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAG 61341 | | ||||| |||||||| || || | || | || |||| || | || || ||| Sbjct 3307031 ATTCCCGAGGCTCGTTGTTTTTATGGAATGCAAGTCGCTGTGGAAAACATTCATTCTGAG 3307090 Query 61342 ATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTC 61401 |||||| | |||| || ||||| ||| ||| ||| | | ||||| || |||| Sbjct 3307091 ATGTACTCTCTTCTGATTGATACCTACGTCAAGGATCCGATAGAACGCGACTTTCTGTTT 3307150 Query 61402 AATGCCATCGAGACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGGA 61459 || ||||| | ||| | ||| ||| || ||| || |||||||| | | |||| Sbjct 3307151 AACGCCATTCAAACGTTGCCGT--GTGTTGCTAAGAAGGCCGATTGGGCGCTTAGGTGGA 3307208 Query 61460 TCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTG 61519 | | | || || ||| | | | || || || |||| || || | |||| || | Sbjct 3307209 TTGCGAATAAAAAGGCACCGTACGCGGAGCGTCTGGTGGCGTTCGCTGCTATCGAAGGCG 3307268 Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579 |||| || ||| || ||||| | ||||| ||| | ||||| ||||| || ||||| | Sbjct 3307269 TATTCTTTTCTGGTTCATTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTG 3307328 Query 61580 GTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTG 61639 | || ||||| || || ||| |||| || || || ||| | || |||||||| Sbjct 3307329 GCCTCACCTTTAGTAACGAGCTGATCAGTCGAGATGAAGGCCTCCACACGGATTTTGCAT 3307388 Query 61640 TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTG 61699 | | || |||| || | ||||| || ||| ||| | || ||| || Sbjct 3307389 GCCTCATTTTTAAAC---ATATTGTGAACAAGCCTACGGCGGAAAGGGTTTATGACATCA 3307445 Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759 | | ||||| || | ||| ||| |||||||| || ||||| |||| ||| || | Sbjct 3307446 TGAGGGAGGCAGTCAGTATTGAATGCGAATTTCTTACGGACGCCCTGCCTGTCGATCTTA 3307505 Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 | |||||||||||| | |||||| |||||||| || ||||||||||| || Sbjct 3307506 TTGGCATGAATTGTCGCTTAATGTGTCAGTATATAAGGTTCGTTGCCGACCGACT 3307560 >seq8 Length=2505178 Score = 120 bits (132), Expect = 2e-22 Identities = 209/299 (70%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| |||||||| || ||||| || ||| ||||||||| || || || || ||| Sbjct 602902 CATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATTTCTTCAGC 602843 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||| ||| || || || || || | |||| | | || | |||||||||||| || | Sbjct 602842 GCCAGTG-TTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGAGAT 602784 Query 66459 AGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGT 66518 ||||||| || | || |||||| ||| || || ||||| || |||||| ||| Sbjct 602783 AGATGGCAAAGGCACCGGGTCGTTTGTTGCCGCCCTGATCGACATAACGAGCGGTGCTGT 602724 Query 66519 TGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGG 66578 ||||||| || | ||||||||| || || || || | ||||| || || |||| | Sbjct 602723 TGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCGATAAACG 602664 Query 66579 ATCCTCGTGC-CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 | || ||| || || ||||||||| ||||| || ||||| || | |||||||| Sbjct 602663 -TATTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGCTTTTCGAGAT 602606 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||||||| |||||||| | || || || | ||||||||||| |||| ||| | Sbjct 603321 CCACAAATTTGGGAAGAGAAATGGAAGCCAAATTGCAGACAGCAGTCTCTGTAGGCGAAC 603262 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | ||||||||||| || ||||| || || ||| |||||| |||| | || || | Sbjct 603261 TGTACTCGACAATCTCAGTGCAAAGGTTCGAGCACTTTATGGTTCCCAGGTGTTGATGGT 603202 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | |||||||||||| | ||| || |||| ||| ||||| |||| || || | || Sbjct 603201 TGGACTTGCGATTGCAGGAATCTTTATACAGCATAAACGGATTGCCTGTTTCGATCTGAT 603142 Query 66171 ACTCAATGAT 66180 |||||| || Sbjct 603141 TCTCAATAAT 603132 >seq380 Length=4867503 Score = 82.4 bits (90), Expect = 6e-11 Identities = 76/95 (80%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 9147 TTGGGCCCCATTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCAT 9206 ||||||| ||||||||||||||||||| || | ||||||| ||||||||||| | Sbjct 4312329 TTGGGCCGG-TTTACGGTTTCCAGTGGCGTCACTGCGGTGCTGAATACATCGATTGCAAA 4312271 Query 9207 ACGGACTATACGGGCCAAGGTGTGGATCAGTTGGC 9241 |||||||| |||| || || || || |||||||| Sbjct 4312270 ACGGACTACTCGGGACAGGGGGTTGACCAGTTGGC 4312236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397541219695280